nsv1035019
- Organism: Homo sapiens
- Study:nstd100 (Coe et al. 2014)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:12
- Validation:Not tested
- Clinical Assertions: No
- Region Size:145,354
- Publication(s):Coe et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 821 SVs from 80 studies. See in: genome view
Overlapping variant regions from other studies: 932 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 456 SVs from 27 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1035019 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 61,520,009 | 61,665,362 |
| nsv1035019 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 44,727,847 | 44,873,200 |
| nsv1035019 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000009.10 | Chr9 | 44,667,843 | 44,813,196 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv3695462 | copy number loss | SNP array | Probe signal intensity |
| nssv3695463 | copy number loss | SNP array | Probe signal intensity |
| nssv3695464 | copy number gain | SNP array | Probe signal intensity |
| nssv3695465 | copy number gain | SNP array | Probe signal intensity |
| nssv3695466 | copy number gain | SNP array | Probe signal intensity |
| nssv3695467 | copy number loss | SNP array | Probe signal intensity |
| nssv3695468 | copy number loss | SNP array | Probe signal intensity |
| nssv3761466 | copy number gain | SNP array | Probe signal intensity |
| nssv3761467 | copy number gain | SNP array | Probe signal intensity |
| nssv3761468 | copy number loss | SNP array | Probe signal intensity |
| nssv3761469 | copy number gain | SNP array | Probe signal intensity |
| nssv3761470 | copy number loss | SNP array | Probe signal intensity |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv3695462 | Remapped | Perfect | NC_000009.12:g.(?_ 61520009)_(6166536 2_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 61,520,009 | 61,665,362 |
| nssv3695463 | Remapped | Perfect | NC_000009.12:g.(?_ 61520009)_(6166536 2_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 61,520,009 | 61,665,362 |
| nssv3695464 | Remapped | Perfect | NC_000009.12:g.(?_ 61520009)_(6166536 2_?)dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 61,520,009 | 61,665,362 |
| nssv3695465 | Remapped | Perfect | NC_000009.12:g.(?_ 61520009)_(6166536 2_?)dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 61,520,009 | 61,665,362 |
| nssv3695466 | Remapped | Perfect | NC_000009.12:g.(?_ 61520009)_(6166536 2_?)dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 61,520,009 | 61,665,362 |
| nssv3695467 | Remapped | Perfect | NC_000009.12:g.(?_ 61520009)_(6166536 2_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 61,520,009 | 61,665,362 |
| nssv3695468 | Remapped | Perfect | NC_000009.12:g.(?_ 61520009)_(6166536 2_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 61,520,009 | 61,665,362 |
| nssv3761466 | Remapped | Perfect | NC_000009.12:g.(?_ 61520009)_(6166536 2_?)dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 61,520,009 | 61,665,362 |
| nssv3761467 | Remapped | Perfect | NC_000009.12:g.(?_ 61520009)_(6166536 2_?)dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 61,520,009 | 61,665,362 |
| nssv3761468 | Remapped | Perfect | NC_000009.12:g.(?_ 61520009)_(6166536 2_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 61,520,009 | 61,665,362 |
| nssv3761469 | Remapped | Perfect | NC_000009.12:g.(?_ 61520009)_(6166536 2_?)dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 61,520,009 | 61,665,362 |
| nssv3761470 | Remapped | Perfect | NC_000009.12:g.(?_ 61520009)_(6166536 2_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 61,520,009 | 61,665,362 |
| nssv3695462 | Remapped | Perfect | NC_000009.11:g.(?_ 44727847)_(4487320 0_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 44,727,847 | 44,873,200 |
| nssv3695463 | Remapped | Perfect | NC_000009.11:g.(?_ 44727847)_(4487320 0_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 44,727,847 | 44,873,200 |
| nssv3695464 | Remapped | Perfect | NC_000009.11:g.(?_ 44727847)_(4487320 0_?)dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 44,727,847 | 44,873,200 |
| nssv3695465 | Remapped | Perfect | NC_000009.11:g.(?_ 44727847)_(4487320 0_?)dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 44,727,847 | 44,873,200 |
| nssv3695466 | Remapped | Perfect | NC_000009.11:g.(?_ 44727847)_(4487320 0_?)dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 44,727,847 | 44,873,200 |
| nssv3695467 | Remapped | Perfect | NC_000009.11:g.(?_ 44727847)_(4487320 0_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 44,727,847 | 44,873,200 |
| nssv3695468 | Remapped | Perfect | NC_000009.11:g.(?_ 44727847)_(4487320 0_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 44,727,847 | 44,873,200 |
| nssv3761466 | Remapped | Perfect | NC_000009.11:g.(?_ 44727847)_(4487320 0_?)dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 44,727,847 | 44,873,200 |
| nssv3761467 | Remapped | Perfect | NC_000009.11:g.(?_ 44727847)_(4487320 0_?)dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 44,727,847 | 44,873,200 |
| nssv3761468 | Remapped | Perfect | NC_000009.11:g.(?_ 44727847)_(4487320 0_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 44,727,847 | 44,873,200 |
| nssv3761469 | Remapped | Perfect | NC_000009.11:g.(?_ 44727847)_(4487320 0_?)dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 44,727,847 | 44,873,200 |
| nssv3761470 | Remapped | Perfect | NC_000009.11:g.(?_ 44727847)_(4487320 0_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 44,727,847 | 44,873,200 |
| nssv3695462 | Submitted genomic | NC_000009.10:g.(?_ 44667843)_(4481319 6_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 44,667,843 | 44,813,196 | ||
| nssv3695463 | Submitted genomic | NC_000009.10:g.(?_ 44667843)_(4481319 6_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 44,667,843 | 44,813,196 | ||
| nssv3695464 | Submitted genomic | NC_000009.10:g.(?_ 44667843)_(4481319 6_?)dup | NCBI36 (hg18) | NC_000009.10 | Chr9 | 44,667,843 | 44,813,196 | ||
| nssv3695465 | Submitted genomic | NC_000009.10:g.(?_ 44667843)_(4481319 6_?)dup | NCBI36 (hg18) | NC_000009.10 | Chr9 | 44,667,843 | 44,813,196 | ||
| nssv3695466 | Submitted genomic | NC_000009.10:g.(?_ 44667843)_(4481319 6_?)dup | NCBI36 (hg18) | NC_000009.10 | Chr9 | 44,667,843 | 44,813,196 | ||
| nssv3695467 | Submitted genomic | NC_000009.10:g.(?_ 44667843)_(4481319 6_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 44,667,843 | 44,813,196 | ||
| nssv3695468 | Submitted genomic | NC_000009.10:g.(?_ 44667843)_(4481319 6_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 44,667,843 | 44,813,196 | ||
| nssv3761466 | Submitted genomic | NC_000009.10:g.(?_ 44667843)_(4481319 6_?)dup | NCBI36 (hg18) | NC_000009.10 | Chr9 | 44,667,843 | 44,813,196 | ||
| nssv3761467 | Submitted genomic | NC_000009.10:g.(?_ 44667843)_(4481319 6_?)dup | NCBI36 (hg18) | NC_000009.10 | Chr9 | 44,667,843 | 44,813,196 | ||
| nssv3761468 | Submitted genomic | NC_000009.10:g.(?_ 44667843)_(4481319 6_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 44,667,843 | 44,813,196 | ||
| nssv3761469 | Submitted genomic | NC_000009.10:g.(?_ 44667843)_(4481319 6_?)dup | NCBI36 (hg18) | NC_000009.10 | Chr9 | 44,667,843 | 44,813,196 | ||
| nssv3761470 | Submitted genomic | NC_000009.10:g.(?_ 44667843)_(4481319 6_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 44,667,843 | 44,813,196 |