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dbVar

Database of genomic structural variation

nsv1043084

Organism: Homo sapiens

Study:nstd100 (Coe et al. 2014)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:NCBI36 (hg18)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:26,302

Publication(s):Coe et al. 2014

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 237 SVs from 42 studies. See in: genome view

Remapped(Score: Perfect):93,028,903-93,055,204

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv1043084	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000015.10	Chr15	93,028,903	93,055,204
nsv1043084	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000015.9	Chr15	93,572,133	93,598,434
nsv1043084	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000015.8	Chr15	91,373,137	91,399,438

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv3471792	copy number loss	9879468	Oligo aCGH	Probe signal intensity	8
nssv3476142	copy number loss	9872346	Oligo aCGH	Probe signal intensity	nssv3453836, nssv3465631
nssv3477776	copy number gain	9884024	Oligo aCGH	Probe signal intensity	nssv3470638, nssv3454172
nssv3478306	copy number loss	9880363	Oligo aCGH	Probe signal intensity	nssv3448036
nssv3480192	copy number loss	9871937	Oligo aCGH	Probe signal intensity	6

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv3471792	Remapped	Perfect	NC_000015.10:g.(?_ 93028903)_(9305520 4_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	93,028,903	93,055,204
nssv3476142	Remapped	Perfect	NC_000015.10:g.(?_ 93028903)_(9305520 4_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	93,028,903	93,055,204
nssv3477776	Remapped	Perfect	NC_000015.10:g.(?_ 93028903)_(9305520 4_?)dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	93,028,903	93,055,204
nssv3478306	Remapped	Perfect	NC_000015.10:g.(?_ 93028903)_(9305520 4_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	93,028,903	93,055,204
nssv3480192	Remapped	Perfect	NC_000015.10:g.(?_ 93028903)_(9305520 4_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	93,028,903	93,055,204
nssv3471792	Remapped	Perfect	NC_000015.9:g.(?_9 3572133)_(93598434 _?)del	GRCh37.p13	First Pass	NC_000015.9	Chr15	93,572,133	93,598,434
nssv3476142	Remapped	Perfect	NC_000015.9:g.(?_9 3572133)_(93598434 _?)del	GRCh37.p13	First Pass	NC_000015.9	Chr15	93,572,133	93,598,434
nssv3477776	Remapped	Perfect	NC_000015.9:g.(?_9 3572133)_(93598434 _?)dup	GRCh37.p13	First Pass	NC_000015.9	Chr15	93,572,133	93,598,434
nssv3478306	Remapped	Perfect	NC_000015.9:g.(?_9 3572133)_(93598434 _?)del	GRCh37.p13	First Pass	NC_000015.9	Chr15	93,572,133	93,598,434
nssv3480192	Remapped	Perfect	NC_000015.9:g.(?_9 3572133)_(93598434 _?)del	GRCh37.p13	First Pass	NC_000015.9	Chr15	93,572,133	93,598,434
nssv3471792	Submitted genomic		NC_000015.8:g.(?_9 1373137)_(91399438 _?)del	NCBI36 (hg18)		NC_000015.8	Chr15	91,373,137	91,399,438
nssv3476142	Submitted genomic		NC_000015.8:g.(?_9 1373137)_(91399438 _?)del	NCBI36 (hg18)		NC_000015.8	Chr15	91,373,137	91,399,438
nssv3477776	Submitted genomic		NC_000015.8:g.(?_9 1373137)_(91399438 _?)dup	NCBI36 (hg18)		NC_000015.8	Chr15	91,373,137	91,399,438
nssv3478306	Submitted genomic		NC_000015.8:g.(?_9 1373137)_(91399438 _?)del	NCBI36 (hg18)		NC_000015.8	Chr15	91,373,137	91,399,438
nssv3480192	Submitted genomic		NC_000015.8:g.(?_9 1373137)_(91399438 _?)del	NCBI36 (hg18)		NC_000015.8	Chr15	91,373,137	91,399,438

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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