nsv1056587
- Organism: Homo sapiens
- Study:nstd100 (Coe et al. 2014)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1,003,287
- Publication(s):Coe et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 3160 SVs from 86 studies. See in: genome view
Overlapping variant regions from other studies: 3160 SVs from 86 studies. See in: genome view
Overlapping variant regions from other studies: 773 SVs from 25 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1056587 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 29,259,820 | 30,263,106 |
| nsv1056587 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000018.9 | Chr18 | 26,839,785 | 27,843,071 |
| nsv1056587 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000018.8 | Chr18 | 25,093,783 | 26,097,069 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv3564149 | copy number loss | SNP array | Probe signal intensity |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv3564149 | Remapped | Perfect | NC_000018.10:g.(?_ 29259820)_(3026310 6_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 29,259,820 | 30,263,106 |
| nssv3564149 | Remapped | Perfect | NC_000018.9:g.(?_2 6839785)_(27843071 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 26,839,785 | 27,843,071 |
| nssv3564149 | Submitted genomic | NC_000018.8:g.(?_2 5093783)_(26097069 _?)del | NCBI36 (hg18) | NC_000018.8 | Chr18 | 25,093,783 | 26,097,069 |