nsv10764
- Organism: Homo sapiens
- Study:nstd4 (Perry et al. 2008)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI35 (hg17)
- Variant Calls:8
- Validation:Not tested
- Clinical Assertions: No
- Region Size:21,996
- Publication(s):Perry et al. 2008
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 133 SVs from 23 studies. See in: genome view
Overlapping variant regions from other studies: 133 SVs from 23 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
---|---|---|---|---|---|---|---|---|---|
nsv10764 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 156,046,034 | 156,068,029 |
nsv10764 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 155,473,044 | 155,495,039 |
nsv10764 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000005.8 | Chr5 | 155,405,622 | 155,427,617 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv15162 | copy number loss | NA18502 | Oligo aCGH | Probe signal intensity | 703 |
nssv13652 | copy number loss | NA07029 | Oligo aCGH | Probe signal intensity | 544 |
nssv13835 | copy number loss | NA10847 | Oligo aCGH | Probe signal intensity | 437 |
nssv13867 | copy number loss | NA11830 | Oligo aCGH | Probe signal intensity | 568 |
nssv14343 | copy number loss | NA07048 | Oligo aCGH | Probe signal intensity | 564 |
nssv15681 | copy number loss | NA18860 | Oligo aCGH | Probe signal intensity | 768 |
nssv15884 | copy number loss | NA18517 | Oligo aCGH | Probe signal intensity | 698 |
nssv15192 | copy number loss | NA18502 | Oligo aCGH | Probe signal intensity | 703 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nssv15162 | Remapped | Perfect | NC_000005.10:g.(15 6046034_156051396) _(156054172_156054 706)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,046,034 | 156,051,396 | 156,054,172 | 156,054,706 |
nssv13652 | Remapped | Perfect | NC_000005.10:g.(15 6046034_156051396) _(156061231_156068 029)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,046,034 | 156,051,396 | 156,061,231 | 156,068,029 |
nssv13835 | Remapped | Perfect | NC_000005.10:g.(15 6046034_156051396) _(156061231_156068 029)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,046,034 | 156,051,396 | 156,061,231 | 156,068,029 |
nssv13867 | Remapped | Perfect | NC_000005.10:g.(15 6046034_156051396) _(156061231_156068 029)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,046,034 | 156,051,396 | 156,061,231 | 156,068,029 |
nssv14343 | Remapped | Perfect | NC_000005.10:g.(15 6046034_156051396) _(156061231_156068 029)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,046,034 | 156,051,396 | 156,061,231 | 156,068,029 |
nssv15681 | Remapped | Perfect | NC_000005.10:g.(15 6046034_156051396) _(156061231_156068 029)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,046,034 | 156,051,396 | 156,061,231 | 156,068,029 |
nssv15884 | Remapped | Perfect | NC_000005.10:g.(15 6046034_156051396) _(156061231_156068 029)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,046,034 | 156,051,396 | 156,061,231 | 156,068,029 |
nssv15192 | Remapped | Perfect | NC_000005.10:g.(15 6054172_156054706) _(156061231_156068 029)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,054,172 | 156,054,706 | 156,061,231 | 156,068,029 |
nssv15162 | Remapped | Perfect | NC_000005.9:g.(155 473044_155478406)_ (155481182_1554817 16)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,473,044 | 155,478,406 | 155,481,182 | 155,481,716 |
nssv13652 | Remapped | Perfect | NC_000005.9:g.(155 473044_155478406)_ (155488241_1554950 39)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,473,044 | 155,478,406 | 155,488,241 | 155,495,039 |
nssv13835 | Remapped | Perfect | NC_000005.9:g.(155 473044_155478406)_ (155488241_1554950 39)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,473,044 | 155,478,406 | 155,488,241 | 155,495,039 |
nssv13867 | Remapped | Perfect | NC_000005.9:g.(155 473044_155478406)_ (155488241_1554950 39)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,473,044 | 155,478,406 | 155,488,241 | 155,495,039 |
nssv14343 | Remapped | Perfect | NC_000005.9:g.(155 473044_155478406)_ (155488241_1554950 39)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,473,044 | 155,478,406 | 155,488,241 | 155,495,039 |
nssv15681 | Remapped | Perfect | NC_000005.9:g.(155 473044_155478406)_ (155488241_1554950 39)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,473,044 | 155,478,406 | 155,488,241 | 155,495,039 |
nssv15884 | Remapped | Perfect | NC_000005.9:g.(155 473044_155478406)_ (155488241_1554950 39)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,473,044 | 155,478,406 | 155,488,241 | 155,495,039 |
nssv15192 | Remapped | Perfect | NC_000005.9:g.(155 481182_155481716)_ (155488241_1554950 39)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,481,182 | 155,481,716 | 155,488,241 | 155,495,039 |
nssv15162 | Submitted genomic | NC_000005.8:g.(155 405622_155410984)_ (155413760_1554142 94)del | NCBI35 (hg17) | NC_000005.8 | Chr5 | 155,405,622 | 155,410,984 | 155,413,760 | 155,414,294 | ||
nssv13652 | Submitted genomic | NC_000005.8:g.(155 405622_155410984)_ (155420819_1554276 17)del | NCBI35 (hg17) | NC_000005.8 | Chr5 | 155,405,622 | 155,410,984 | 155,420,819 | 155,427,617 | ||
nssv13835 | Submitted genomic | NC_000005.8:g.(155 405622_155410984)_ (155420819_1554276 17)del | NCBI35 (hg17) | NC_000005.8 | Chr5 | 155,405,622 | 155,410,984 | 155,420,819 | 155,427,617 | ||
nssv13867 | Submitted genomic | NC_000005.8:g.(155 405622_155410984)_ (155420819_1554276 17)del | NCBI35 (hg17) | NC_000005.8 | Chr5 | 155,405,622 | 155,410,984 | 155,420,819 | 155,427,617 | ||
nssv14343 | Submitted genomic | NC_000005.8:g.(155 405622_155410984)_ (155420819_1554276 17)del | NCBI35 (hg17) | NC_000005.8 | Chr5 | 155,405,622 | 155,410,984 | 155,420,819 | 155,427,617 | ||
nssv15681 | Submitted genomic | NC_000005.8:g.(155 405622_155410984)_ (155420819_1554276 17)del | NCBI35 (hg17) | NC_000005.8 | Chr5 | 155,405,622 | 155,410,984 | 155,420,819 | 155,427,617 | ||
nssv15884 | Submitted genomic | NC_000005.8:g.(155 405622_155410984)_ (155420819_1554276 17)del | NCBI35 (hg17) | NC_000005.8 | Chr5 | 155,405,622 | 155,410,984 | 155,420,819 | 155,427,617 | ||
nssv15192 | Submitted genomic | NC_000005.8:g.(155 413760_155414294)_ (155420819_1554276 17)del | NCBI35 (hg17) | NC_000005.8 | Chr5 | 155,413,760 | 155,414,294 | 155,420,819 | 155,427,617 |