nsv1187787

Organisms: Homo sapiens neanderthalensis, Homo sapiens ssp. Denisova, Homo sapiens

Study:nstd112 (Sudmant et al. 2015)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:226
Validation:Not tested
Clinical Assertions: No
Region Size:53,809

Publication(s):Sudmant et al. 2015

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 505 SVs from 28 studies. See in: genome view

Remapped(Score: Perfect):150,825,292-150,879,100

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv1187787	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nsv1187787	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000023.10	ChrX	149,993,765	150,047,573

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv7445508	copy number variation	SAMEA1706756	Sequencing	Read depth	2	14,591
nssv7445509	copy number variation	SAMEA2164595	Sequencing	Read depth	1	14,625
nssv7445510	copy number variation	SAMEA2164384	Sequencing	Read depth	1	14,564
nssv7445511	copy number variation	SAMEA2164391	Sequencing	Read depth	1	14,595
nssv7445512	copy number variation	SAMEA2164386	Sequencing	Read depth	1	14,641
nssv7445513	copy number variation	SAMEA2164390	Sequencing	Read depth	1	14,669
nssv7445514	copy number variation	SAMEA2164160	Sequencing	Read depth	1	14,556
nssv7445515	copy number variation	SAMEA2164164	Sequencing	Read depth	1	14,628
nssv7445516	copy number variation	SAMN03783154	Sequencing	Read depth	1	14,532
nssv7445517	copy number variation	SAMN03783155	Sequencing	Read depth	1	14,583
nssv7445518	copy number variation	SAMN01036798	Sequencing	Read depth	2	14,574
nssv7445519	copy number variation	SAMN01036803	Sequencing	Read depth	1	14,603
nssv7445520	copy number variation	SAMN00779933	Sequencing	Read depth	1	14,586
nssv7445521	copy number variation	SAMN00779943	Sequencing	Read depth	2	14,621
nssv7445522	copy number variation	SAMN03783156	Sequencing	Read depth	2	14,581
nssv7445523	copy number variation	SAMN00001044	Sequencing	Read depth	2	14,529
nssv7445524	copy number variation	SAMN00001060	Sequencing	Read depth	1	14,536
nssv7445525	copy number variation	SAMN03783157	Sequencing	Read depth	2	14,647
nssv7445526	copy number variation	SAMN03783158	Sequencing	Read depth	2	14,668
nssv7445527	copy number variation	SAMEA2164453	Sequencing	Read depth	1	14,636
nssv7445528	copy number variation	SAMN00008078	Sequencing	Read depth	1	14,451
nssv7445529	copy number variation	SAMN00008106	Sequencing	Read depth	1	14,556
nssv7445530	copy number variation	SAMEA2164153	Sequencing	Read depth	1	14,487
nssv7445531	copy number variation	SAMN02603792	Sequencing	Read depth	2	14,497
nssv7445532	copy number variation	SAMN01036781	Sequencing	Read depth	1	14,494
nssv7445533	copy number variation	SAMN01036783	Sequencing	Read depth	2	14,544
nssv7445534	copy number variation	SAMEA2164490	Sequencing	Read depth	1	14,660
nssv7445535	copy number variation	SAMN02603829	Sequencing	Read depth	2	14,639
nssv7445536	copy number variation	SAMN03783159	Sequencing	Read depth	1	14,494
nssv7445537	copy number variation	SAMEA1706724	Sequencing	Read depth	1	14,499
nssv7445538	copy number variation	SAMN02603818	Sequencing	Read depth	1	14,636
nssv7445539	copy number variation	SAMN02603821	Sequencing	Read depth	1	14,590
nssv7445540	copy number variation	SAMN03783160	Sequencing	Read depth	2	14,691
nssv7445541	copy number variation	SAMN03783161	Sequencing	Read depth	2	14,683
nssv7445542	copy number variation	SAMEA2164340	Sequencing	Read depth	1	14,576
nssv7445543	copy number variation	SAMEA2164175	Sequencing	Read depth	1	14,530
nssv7445544	copy number variation	SAMN03783162	Sequencing	Read depth	1	14,644
nssv7445545	copy number variation	SAMEA2164380	Sequencing	Read depth	1	14,669
nssv7445546	copy number variation	SAMN03783163	Sequencing	Read depth	2	14,670
nssv7445547	copy number variation	SAMN02603802	Sequencing	Read depth	2	14,703
nssv7445548	copy number variation	SAMN02603804	Sequencing	Read depth	2	14,669
nssv7445549	copy number variation	SAMN03783164	Sequencing	Read depth	3	14,599
nssv7445550	copy number variation	SAMN03783165	Sequencing	Read depth	2	14,756
nssv7445551	copy number variation	SAMN03783166	Sequencing	Read depth	1	14,670
nssv7445552	copy number variation	SAMN03783167	Sequencing	Read depth	2	14,675
nssv7445553	copy number variation	SAMEA1706748	Sequencing	Read depth	2	14,594
nssv7445554	copy number variation	SAMN03783168	Sequencing	Read depth	2	14,640
nssv7445555	copy number variation	SAMN03783169	Sequencing	Read depth	2	14,665
nssv7445556	copy number variation	SAMEA2164395	Sequencing	Read depth	1	14,620
nssv7445557	copy number variation	SAMN03783170	Sequencing	Read depth	2	14,618
nssv7445558	copy number variation	SAMN03783171	Sequencing	Read depth	2	14,288
nssv7445559	copy number variation	SAMN03783172	Sequencing	Read depth	2	14,778
nssv7445560	copy number variation	SAMN03783173	Sequencing	Read depth	2	14,664
nssv7445561	copy number variation	SAMN03783174	Sequencing	Read depth	1	14,675
nssv7445562	copy number variation	SAMEA1487354	Sequencing	Read depth	2	13,715
nssv7445563	copy number variation	SAMEA1706711	Sequencing	Read depth	2	14,408
nssv7445564	copy number variation	SAMN03783175	Sequencing	Read depth	1	14,638
nssv7445565	copy number variation	SAMN03783176	Sequencing	Read depth	1	14,619
nssv7445566	copy number variation	SAMN03783177	Sequencing	Read depth	1	14,680
nssv7445567	copy number variation	SAMN03783178	Sequencing	Read depth	1	14,666
nssv7445568	copy number variation	SAMN02603795	Sequencing	Read depth	2	14,463
nssv7445569	copy number variation	SAMEA2164252	Sequencing	Read depth	1	14,683
nssv7445570	copy number variation	SAMEA2164535	Sequencing	Read depth	1	14,624
nssv7445571	copy number variation	SAMEA1706737	Sequencing	Read depth	2	14,566
nssv7445572	copy number variation	SAMN03783179	Sequencing	Read depth	2	14,391
nssv7445573	copy number variation	SAMEA1706731	Sequencing	Read depth	2	14,659
nssv7445574	copy number variation	SAMEA1706716	Sequencing	Read depth	2	14,592
nssv7445575	copy number variation	SAMEA2164290	Sequencing	Read depth	1	14,669
nssv7445576	copy number variation	SAMEA2164480	Sequencing	Read depth	1	14,476
nssv7445577	copy number variation	SAMN03783180	Sequencing	Read depth	2	14,565
nssv7445578	copy number variation	SAMN03783181	Sequencing	Read depth	1	14,709
nssv7445579	copy number variation	SAMN03783182	Sequencing	Read depth	2	14,676
nssv7445580	copy number variation	SAMN00001633	Sequencing	Read depth	1	14,518
nssv7445581	copy number variation	SAMN00249816	Sequencing	Read depth	2	14,499
nssv7445582	copy number variation	SAMN00249822	Sequencing	Read depth	1	14,670
nssv7445583	copy number variation	SAMN03783183	Sequencing	Read depth	2	14,720
nssv7445584	copy number variation	SAMN00798868	Sequencing	Read depth	1	14,640
nssv7445585	copy number variation	SAMEA2164540	Sequencing	Read depth	1	14,622
nssv7445586	copy number variation	SAMEA1706757	Sequencing	Read depth	2	14,601
nssv7445587	copy number variation	SAMEA2164448	Sequencing	Read depth	1	14,687
nssv7445588	copy number variation	SAMN03783184	Sequencing	Read depth	2	14,718
nssv7445589	copy number variation	SAMEA1706740	Sequencing	Read depth	2	14,672
nssv7445590	copy number variation	SAMEA2164473	Sequencing	Read depth	1	14,607
nssv7445591	copy number variation	SAMEA2164552	Sequencing	Read depth	1	14,643
nssv7445592	copy number variation	SAMEA2164557	Sequencing	Read depth	1	14,620
nssv7445593	copy number variation	SAMEA1706733	Sequencing	Read depth	2	14,466
nssv7445594	copy number variation	SAMEA2164456	Sequencing	Read depth	1	14,524
nssv7445595	copy number variation	SAMN03783185	Sequencing	Read depth	2	14,639
nssv7445596	copy number variation	SAMEA2164550	Sequencing	Read depth	1	14,592
nssv7445597	copy number variation	SAMN03783186	Sequencing	Read depth	1	14,725
nssv7445598	copy number variation	SAMN03783187	Sequencing	Read depth	2	14,688
nssv7445599	copy number variation	SAMEA2164561	Sequencing	Read depth	1	14,640
nssv7445600	copy number variation	SAMN03783188	Sequencing	Read depth	2	14,511
nssv7445601	copy number variation	SAMEA2164415	Sequencing	Read depth	1	14,657
nssv7445602	copy number variation	SAMEA1706717	Sequencing	Read depth	2	14,656
nssv7445603	copy number variation	SAMEA2164522	Sequencing	Read depth	1	14,637
nssv7445604	copy number variation	SAMN03783189	Sequencing	Read depth	2	14,403
nssv7445605	copy number variation	SAMEA2164485	Sequencing	Read depth	1	14,504
nssv7445606	copy number variation	SAMEA2164489	Sequencing	Read depth	1	14,665
nssv7446345	copy number variation	SAMEA2164437	Sequencing	Read depth	1	14,735

Showing 100 of 226

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv7445508	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445509	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445510	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445511	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445512	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445513	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445514	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445515	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445516	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445517	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445518	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445519	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445520	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445521	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445522	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445523	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445524	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445525	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445526	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445527	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445528	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445529	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445530	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445531	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445532	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445533	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445534	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445535	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445536	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445537	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445538	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445539	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445540	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445541	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445542	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445543	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445544	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445545	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445546	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445547	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445548	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445549	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445550	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445551	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445552	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445553	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445554	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445555	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445556	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445557	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445558	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445559	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445560	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445561	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445562	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445563	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445564	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445565	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445566	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445567	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445568	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445569	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445570	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445571	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445572	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445573	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445574	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445575	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445576	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445577	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445578	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445579	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445580	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445581	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445582	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445583	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445584	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445585	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445586	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445587	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445588	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445589	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445590	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445591	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445592	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445593	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445594	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445595	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445596	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445597	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445598	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445599	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445600	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445601	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445602	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445603	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445604	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445605	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7445606	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100
nssv7446345	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	150,825,292	150,879,100

Showing 100 of 452

dbVar

Database of genomic structural variation

nsv1187787

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant