nsv1187789

Organisms: Homo sapiens neanderthalensis, Homo sapiens ssp. Denisova, Homo sapiens

Study:nstd112 (Sudmant et al. 2015)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:226
Validation:Not tested
Clinical Assertions: No
Region Size:1,392

Publication(s):Sudmant et al. 2015

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 428 SVs from 21 studies. See in: genome view

Remapped(Score: Perfect):25,851,544-25,852,935

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv1187789	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nsv1187789	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000023.10	ChrX	25,869,661	25,871,052

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv7364743	copy number variation	SAMEA1706756	Sequencing	Read depth	2	14,591
nssv7364744	copy number variation	SAMEA2164595	Sequencing	Read depth	1	14,625
nssv7364745	copy number variation	SAMEA2164384	Sequencing	Read depth	1	14,564
nssv7364746	copy number variation	SAMEA2164391	Sequencing	Read depth	1	14,595
nssv7364747	copy number variation	SAMEA2164386	Sequencing	Read depth	1	14,641
nssv7364748	copy number variation	SAMEA2164390	Sequencing	Read depth	1	14,669
nssv7364749	copy number variation	SAMEA2164160	Sequencing	Read depth	1	14,556
nssv7364750	copy number variation	SAMEA2164164	Sequencing	Read depth	1	14,628
nssv7364751	copy number variation	SAMN03783154	Sequencing	Read depth	1	14,532
nssv7364752	copy number variation	SAMN03783155	Sequencing	Read depth	1	14,583
nssv7364753	copy number variation	SAMN01036798	Sequencing	Read depth	2	14,574
nssv7364754	copy number variation	SAMN01036803	Sequencing	Read depth	1	14,603
nssv7364755	copy number variation	SAMN00779933	Sequencing	Read depth	1	14,586
nssv7364756	copy number variation	SAMN00779943	Sequencing	Read depth	2	14,621
nssv7364757	copy number variation	SAMN03783156	Sequencing	Read depth	2	14,581
nssv7364758	copy number variation	SAMN00001044	Sequencing	Read depth	2	14,529
nssv7364759	copy number variation	SAMN00001060	Sequencing	Read depth	1	14,536
nssv7364760	copy number variation	SAMN03783157	Sequencing	Read depth	2	14,647
nssv7364761	copy number variation	SAMN03783158	Sequencing	Read depth	2	14,668
nssv7364762	copy number variation	SAMEA2164453	Sequencing	Read depth	1	14,636
nssv7364763	copy number variation	SAMN00008078	Sequencing	Read depth	1	14,451
nssv7364764	copy number variation	SAMN00008106	Sequencing	Read depth	1	14,556
nssv7364765	copy number variation	SAMEA2164153	Sequencing	Read depth	1	14,487
nssv7364766	copy number variation	SAMN02603792	Sequencing	Read depth	2	14,497
nssv7364767	copy number variation	SAMN01036781	Sequencing	Read depth	1	14,494
nssv7364768	copy number variation	SAMN01036783	Sequencing	Read depth	2	14,544
nssv7364769	copy number variation	SAMEA2164490	Sequencing	Read depth	1	14,660
nssv7364770	copy number variation	SAMN02603829	Sequencing	Read depth	2	14,639
nssv7364771	copy number variation	SAMN03783159	Sequencing	Read depth	1	14,494
nssv7364772	copy number variation	SAMEA1706724	Sequencing	Read depth	1	14,499
nssv7364773	copy number variation	SAMN02603818	Sequencing	Read depth	1	14,636
nssv7364774	copy number variation	SAMN02603821	Sequencing	Read depth	1	14,590
nssv7364775	copy number variation	SAMN03783160	Sequencing	Read depth	3	14,691
nssv7364776	copy number variation	SAMN03783161	Sequencing	Read depth	2	14,683
nssv7364777	copy number variation	SAMEA2164340	Sequencing	Read depth	1	14,576
nssv7364778	copy number variation	SAMEA2164175	Sequencing	Read depth	1	14,530
nssv7364779	copy number variation	SAMN03783162	Sequencing	Read depth	1	14,644
nssv7364780	copy number variation	SAMEA2164380	Sequencing	Read depth	1	14,669
nssv7364781	copy number variation	SAMN03783163	Sequencing	Read depth	2	14,670
nssv7364782	copy number variation	SAMN02603802	Sequencing	Read depth	2	14,703
nssv7364783	copy number variation	SAMN02603804	Sequencing	Read depth	2	14,669
nssv7364784	copy number variation	SAMN03783164	Sequencing	Read depth	2	14,599
nssv7364785	copy number variation	SAMN03783165	Sequencing	Read depth	2	14,756
nssv7364786	copy number variation	SAMN03783166	Sequencing	Read depth	1	14,670
nssv7364787	copy number variation	SAMN03783167	Sequencing	Read depth	2	14,675
nssv7364788	copy number variation	SAMEA1706748	Sequencing	Read depth	2	14,594
nssv7364789	copy number variation	SAMN03783168	Sequencing	Read depth	2	14,640
nssv7364790	copy number variation	SAMN03783169	Sequencing	Read depth	2	14,665
nssv7364791	copy number variation	SAMEA2164395	Sequencing	Read depth	1	14,620
nssv7364792	copy number variation	SAMN03783170	Sequencing	Read depth	2	14,618
nssv7364793	copy number variation	SAMN03783171	Sequencing	Read depth	3	14,288
nssv7364794	copy number variation	SAMN03783172	Sequencing	Read depth	2	14,778
nssv7364795	copy number variation	SAMN03783173	Sequencing	Read depth	2	14,664
nssv7364796	copy number variation	SAMN03783174	Sequencing	Read depth	1	14,675
nssv7364797	copy number variation	SAMEA1487354	Sequencing	Read depth	2	13,715
nssv7364798	copy number variation	SAMEA1706711	Sequencing	Read depth	2	14,408
nssv7364799	copy number variation	SAMN03783175	Sequencing	Read depth	1	14,638
nssv7364800	copy number variation	SAMN03783176	Sequencing	Read depth	1	14,619
nssv7364801	copy number variation	SAMN03783177	Sequencing	Read depth	1	14,680
nssv7364802	copy number variation	SAMN03783178	Sequencing	Read depth	1	14,666
nssv7364803	copy number variation	SAMN02603795	Sequencing	Read depth	2	14,463
nssv7364804	copy number variation	SAMEA2164252	Sequencing	Read depth	1	14,683
nssv7364805	copy number variation	SAMEA2164535	Sequencing	Read depth	1	14,624
nssv7364806	copy number variation	SAMEA1706737	Sequencing	Read depth	2	14,566
nssv7364807	copy number variation	SAMN03783179	Sequencing	Read depth	2	14,391
nssv7364808	copy number variation	SAMEA1706731	Sequencing	Read depth	2	14,659
nssv7364809	copy number variation	SAMEA1706716	Sequencing	Read depth	2	14,592
nssv7364810	copy number variation	SAMEA2164290	Sequencing	Read depth	1	14,669
nssv7364811	copy number variation	SAMEA2164480	Sequencing	Read depth	1	14,476
nssv7364812	copy number variation	SAMN03783180	Sequencing	Read depth	2	14,565
nssv7364813	copy number variation	SAMN03783181	Sequencing	Read depth	1	14,709
nssv7364814	copy number variation	SAMN03783182	Sequencing	Read depth	2	14,676
nssv7364815	copy number variation	SAMN00001633	Sequencing	Read depth	1	14,518
nssv7364816	copy number variation	SAMN00249816	Sequencing	Read depth	2	14,499
nssv7364817	copy number variation	SAMN00249822	Sequencing	Read depth	1	14,670
nssv7364818	copy number variation	SAMN03783183	Sequencing	Read depth	2	14,720
nssv7364819	copy number variation	SAMN00798868	Sequencing	Read depth	1	14,640
nssv7364820	copy number variation	SAMEA2164540	Sequencing	Read depth	1	14,622
nssv7364821	copy number variation	SAMEA1706757	Sequencing	Read depth	2	14,601
nssv7364822	copy number variation	SAMEA2164448	Sequencing	Read depth	1	14,687
nssv7364823	copy number variation	SAMN03783184	Sequencing	Read depth	2	14,718
nssv7364824	copy number variation	SAMEA1706740	Sequencing	Read depth	2	14,672
nssv7364825	copy number variation	SAMEA2164473	Sequencing	Read depth	1	14,607
nssv7364826	copy number variation	SAMEA2164552	Sequencing	Read depth	1	14,643
nssv7364827	copy number variation	SAMEA2164557	Sequencing	Read depth	1	14,620
nssv7364828	copy number variation	SAMEA1706733	Sequencing	Read depth	2	14,466
nssv7364829	copy number variation	SAMEA2164456	Sequencing	Read depth	1	14,524
nssv7364830	copy number variation	SAMN03783185	Sequencing	Read depth	2	14,639
nssv7364831	copy number variation	SAMEA2164550	Sequencing	Read depth	1	14,592
nssv7364832	copy number variation	SAMN03783186	Sequencing	Read depth	1	14,725
nssv7364833	copy number variation	SAMN03783187	Sequencing	Read depth	2	14,688
nssv7364834	copy number variation	SAMEA2164561	Sequencing	Read depth	1	14,640
nssv7364835	copy number variation	SAMN03783188	Sequencing	Read depth	2	14,511
nssv7364836	copy number variation	SAMEA2164415	Sequencing	Read depth	1	14,657
nssv7364837	copy number variation	SAMEA1706717	Sequencing	Read depth	2	14,656
nssv7364838	copy number variation	SAMEA2164522	Sequencing	Read depth	1	14,637
nssv7364839	copy number variation	SAMN03783189	Sequencing	Read depth	2	14,403
nssv7364840	copy number variation	SAMEA2164485	Sequencing	Read depth	1	14,504
nssv7364841	copy number variation	SAMEA2164489	Sequencing	Read depth	1	14,665
nssv7364842	copy number variation	SAMEA2164437	Sequencing	Read depth	1	14,735

Showing 100 of 226

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv7364743	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364744	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364745	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364746	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364747	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364748	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364749	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364750	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364751	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364752	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364753	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364754	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364755	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364756	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364757	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364758	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364759	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364760	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364761	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364762	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364763	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364764	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364765	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364766	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364767	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364768	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364769	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364770	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364771	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364772	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364773	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364774	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364775	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364776	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364777	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364778	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364779	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364780	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364781	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364782	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364783	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364784	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364785	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364786	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364787	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364788	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364789	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364790	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364791	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364792	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364793	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364794	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364795	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364796	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364797	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364798	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364799	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364800	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364801	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364802	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364803	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364804	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364805	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364806	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364807	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364808	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364809	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364810	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364811	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364812	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364813	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364814	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364815	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364816	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364817	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364818	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364819	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364820	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364821	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364822	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364823	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364824	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364825	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364826	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364827	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364828	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364829	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364830	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364831	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364832	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364833	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364834	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364835	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364836	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364837	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364838	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364839	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364840	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364841	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935
nssv7364842	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	25,851,544	25,852,935

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dbVar

Database of genomic structural variation

nsv1187789

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Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant