nsv1187797

Organisms: Homo sapiens neanderthalensis, Homo sapiens

Study:nstd112 (Sudmant et al. 2015)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:211
Validation:Not tested
Clinical Assertions: No
Region Size:25,488

Publication(s):Sudmant et al. 2015

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 326 SVs from 56 studies. See in: genome view

Remapped(Score: Perfect):24,636,107-24,661,594

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv1187797	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nsv1187797	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000022.10	Chr22	25,032,074	25,057,561

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv6138498	copy number variation	SAMEA1706748	Sequencing	Read depth	21	14,594
nssv6138499	copy number variation	SAMN03783168	Sequencing	Read depth	21	14,640
nssv6138500	copy number variation	SAMN03783169	Sequencing	Read depth	25	14,665
nssv6138501	copy number variation	SAMEA2164395	Sequencing	Read depth	21	14,620
nssv6138502	copy number variation	SAMN03783170	Sequencing	Read depth	22	14,618
nssv6138503	copy number variation	SAMN03783172	Sequencing	Read depth	22	14,778
nssv6138504	copy number variation	SAMN03783173	Sequencing	Read depth	23	14,664
nssv6138505	copy number variation	SAMEA1706711	Sequencing	Read depth	26	14,408
nssv6138506	copy number variation	SAMN03783175	Sequencing	Read depth	20	14,638
nssv6138507	copy number variation	SAMN03783176	Sequencing	Read depth	21	14,619
nssv6138508	copy number variation	SAMN03783177	Sequencing	Read depth	21	14,680
nssv6138509	copy number variation	SAMN03783178	Sequencing	Read depth	21	14,666
nssv6138510	copy number variation	SAMN02603795	Sequencing	Read depth	21	14,463
nssv6138511	copy number variation	SAMEA2164252	Sequencing	Read depth	22	14,683
nssv6138512	copy number variation	SAMEA2164535	Sequencing	Read depth	21	14,624
nssv6138513	copy number variation	SAMEA1706737	Sequencing	Read depth	21	14,566
nssv6138514	copy number variation	SAMN03783179	Sequencing	Read depth	21	14,391
nssv6138515	copy number variation	SAMEA1706731	Sequencing	Read depth	21	14,659
nssv6138516	copy number variation	SAMEA1706716	Sequencing	Read depth	20	14,592
nssv6138517	copy number variation	SAMEA2164290	Sequencing	Read depth	22	14,669
nssv6138518	copy number variation	SAMEA2164480	Sequencing	Read depth	21	14,476
nssv6138519	copy number variation	SAMN03783180	Sequencing	Read depth	21	14,565
nssv6138520	copy number variation	SAMN03783181	Sequencing	Read depth	21	14,709
nssv6138521	copy number variation	SAMN03783182	Sequencing	Read depth	21	14,676
nssv6138522	copy number variation	SAMN00001633	Sequencing	Read depth	21	14,518
nssv6138523	copy number variation	SAMN00249816	Sequencing	Read depth	20	14,499
nssv6138524	copy number variation	SAMN00249822	Sequencing	Read depth	21	14,670
nssv6138525	copy number variation	SAMN03783183	Sequencing	Read depth	21	14,720
nssv6138526	copy number variation	SAMN00798868	Sequencing	Read depth	21	14,640
nssv6138527	copy number variation	SAMEA2164540	Sequencing	Read depth	21	14,622
nssv6138528	copy number variation	SAMEA1706757	Sequencing	Read depth	21	14,601
nssv6138529	copy number variation	SAMEA2164448	Sequencing	Read depth	23	14,687
nssv6138530	copy number variation	SAMN03783184	Sequencing	Read depth	20	14,718
nssv6138531	copy number variation	SAMEA1706740	Sequencing	Read depth	23	14,672
nssv6138532	copy number variation	SAMEA2164473	Sequencing	Read depth	23	14,607
nssv6138533	copy number variation	SAMEA2164552	Sequencing	Read depth	23	14,643
nssv6138534	copy number variation	SAMEA2164557	Sequencing	Read depth	21	14,620
nssv6138535	copy number variation	SAMEA1706733	Sequencing	Read depth	21	14,466
nssv6138536	copy number variation	SAMEA2164456	Sequencing	Read depth	21	14,524
nssv6138537	copy number variation	SAMN03783185	Sequencing	Read depth	21	14,639
nssv6138538	copy number variation	SAMEA2164550	Sequencing	Read depth	21	14,592
nssv6138539	copy number variation	SAMN03783186	Sequencing	Read depth	20	14,725
nssv6138540	copy number variation	SAMN03783187	Sequencing	Read depth	24	14,688
nssv6138541	copy number variation	SAMEA2164561	Sequencing	Read depth	21	14,640
nssv6138542	copy number variation	SAMN03783188	Sequencing	Read depth	22	14,511
nssv6138543	copy number variation	SAMEA2164415	Sequencing	Read depth	21	14,657
nssv6138544	copy number variation	SAMEA1706717	Sequencing	Read depth	21	14,656
nssv6138545	copy number variation	SAMEA2164522	Sequencing	Read depth	21	14,637
nssv6138546	copy number variation	SAMEA2164485	Sequencing	Read depth	21	14,504
nssv6138547	copy number variation	SAMEA2164489	Sequencing	Read depth	20	14,665
nssv6138548	copy number variation	SAMEA2164437	Sequencing	Read depth	25	14,735
nssv6138549	copy number variation	SAMEA1706762	Sequencing	Read depth	22	14,732
nssv6138550	copy number variation	SAMN03783190	Sequencing	Read depth	21	14,633
nssv6138551	copy number variation	SAMN03783191	Sequencing	Read depth	23	14,465
nssv6138552	copy number variation	SAMEA1706753	Sequencing	Read depth	21	14,641
nssv6138553	copy number variation	SAMN03783192	Sequencing	Read depth	21	14,679
nssv6138554	copy number variation	SAMN03783193	Sequencing	Read depth	22	14,596
nssv6138555	copy number variation	SAMN03783194	Sequencing	Read depth	23	14,677
nssv6138556	copy number variation	SAMN03783195	Sequencing	Read depth	25	14,628
nssv6138557	copy number variation	SAMEA2164192	Sequencing	Read depth	21	14,649
nssv6138558	copy number variation	SAMEA2164195	Sequencing	Read depth	24	14,572
nssv6138559	copy number variation	SAMEA2164196	Sequencing	Read depth	22	14,636
nssv6138560	copy number variation	SAMEA2164198	Sequencing	Read depth	22	14,565
nssv6138561	copy number variation	SAMEA2164199	Sequencing	Read depth	23	14,646
nssv6138562	copy number variation	SAMEA2164200	Sequencing	Read depth	24	14,760
nssv6138563	copy number variation	SAMN03783196	Sequencing	Read depth	22	14,660
nssv6138564	copy number variation	SAMEA781343	Sequencing	Read depth	22	14,641
nssv6138565	copy number variation	SAMN03783197	Sequencing	Read depth	22	14,620
nssv6138566	copy number variation	SAMEA2164202	Sequencing	Read depth	22	14,644
nssv6138567	copy number variation	SAMEA2164203	Sequencing	Read depth	22	14,681
nssv6138568	copy number variation	SAMEA2164204	Sequencing	Read depth	21	14,586
nssv6138569	copy number variation	SAMEA2164029	Sequencing	Read depth	22	14,541
nssv6138570	copy number variation	SAMN01090933	Sequencing	Read depth	21	14,699
nssv6138571	copy number variation	SAMN01090934	Sequencing	Read depth	24	14,623
nssv6138572	copy number variation	SAMEA2163994	Sequencing	Read depth	20	14,633
nssv6138573	copy number variation	SAMEA2163998	Sequencing	Read depth	23	14,670
nssv6138574	copy number variation	SAMN03783199	Sequencing	Read depth	22	14,504
nssv6138575	copy number variation	SAMEA2164149	Sequencing	Read depth	20	14,597
nssv6138576	copy number variation	SAMEA2164052	Sequencing	Read depth	20	14,571
nssv6138577	copy number variation	SAMEA2164053	Sequencing	Read depth	21	14,694
nssv6138578	copy number variation	SAMEA1706719	Sequencing	Read depth	21	14,465
nssv6138579	copy number variation	SAMEA2164130	Sequencing	Read depth	22	14,626
nssv6138580	copy number variation	SAMN03783200	Sequencing	Read depth	25	14,620
nssv6138581	copy number variation	SAMN03783201	Sequencing	Read depth	25	14,630
nssv6138582	copy number variation	SAMN03783202	Sequencing	Read depth	22	14,685
nssv6138583	copy number variation	SAMN03783203	Sequencing	Read depth	24	14,596
nssv6138584	copy number variation	SAMEA2164074	Sequencing	Read depth	22	14,668
nssv6138585	copy number variation	SAMEA2164098	Sequencing	Read depth	22	14,746
nssv6138586	copy number variation	SAMN02603780	Sequencing	Read depth	23	14,672
nssv6138587	copy number variation	SAMN01036830	Sequencing	Read depth	26	14,523
nssv6138588	copy number variation	SAMN01036837	Sequencing	Read depth	25	14,485
nssv6138589	copy number variation	SAMN03783204	Sequencing	Read depth	21	14,600
nssv6138590	copy number variation	SAMEA2164095	Sequencing	Read depth	22	14,630
nssv6138591	copy number variation	SAMN03783205	Sequencing	Read depth	23	14,677
nssv6138592	copy number variation	SAMN03783206	Sequencing	Read depth	21	14,659
nssv6138593	copy number variation	SAMN03783207	Sequencing	Read depth	23	14,467
nssv6138594	copy number variation	SAMN03783208	Sequencing	Read depth	21	14,650
nssv6138595	copy number variation	SAMN03783209	Sequencing	Read depth	22	14,587
nssv6139096	copy number variation	SAMEA1706756	Sequencing	Read depth	23	14,591
nssv6139097	copy number variation	SAMEA2164595	Sequencing	Read depth	22	14,625

Showing 100 of 211

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv6138498	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138499	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138500	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138501	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138502	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138503	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138504	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138505	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138506	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138507	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138508	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138509	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138510	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138511	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138512	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138513	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138514	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138515	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138516	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138517	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138518	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138519	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138520	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138521	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138522	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138523	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138524	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138525	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138526	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138527	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138528	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138529	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138530	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138531	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138532	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138533	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138534	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138535	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138536	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138537	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138538	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138539	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138540	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138541	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138542	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138543	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138544	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138545	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138546	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138547	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138548	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138549	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138550	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138551	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138552	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138553	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138554	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138555	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138556	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138557	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138558	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138559	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138560	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138561	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138562	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138563	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138564	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138565	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138566	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138567	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138568	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138569	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138570	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138571	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138572	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138573	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138574	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138575	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138576	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138577	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138578	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138579	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138580	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138581	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138582	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138583	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138584	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138585	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138586	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138587	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138588	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138589	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138590	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138591	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138592	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138593	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138594	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6138595	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6139096	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594
nssv6139097	Remapped	Perfect	GRCh38.p12	First Pass	NC_000022.11	Chr22	24,636,107	24,661,594

Showing 100 of 422

dbVar

Database of genomic structural variation

nsv1187797

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant