nsv1187799

Organisms: Homo sapiens neanderthalensis, Homo sapiens ssp. Denisova, Homo sapiens

Study:nstd112 (Sudmant et al. 2015)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:226
Validation:Not tested
Clinical Assertions: No
Region Size:94,310

Publication(s):Sudmant et al. 2015

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1118 SVs from 49 studies. See in: genome view

Remapped(Score: Perfect):7,706,387-7,800,696

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv1187799	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nsv1187799	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000023.10	ChrX	7,674,428	7,768,737

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv7350042	copy number variation	SAMEA1706756	Sequencing	Read depth	2	14,591
nssv7350043	copy number variation	SAMEA2164595	Sequencing	Read depth	1	14,625
nssv7350044	copy number variation	SAMEA2164384	Sequencing	Read depth	1	14,564
nssv7350045	copy number variation	SAMEA2164391	Sequencing	Read depth	1	14,595
nssv7350046	copy number variation	SAMEA2164386	Sequencing	Read depth	1	14,641
nssv7350047	copy number variation	SAMEA2164390	Sequencing	Read depth	1	14,669
nssv7350048	copy number variation	SAMEA2164160	Sequencing	Read depth	1	14,556
nssv7350049	copy number variation	SAMEA2164164	Sequencing	Read depth	1	14,628
nssv7350050	copy number variation	SAMN03783154	Sequencing	Read depth	1	14,532
nssv7350051	copy number variation	SAMN03783155	Sequencing	Read depth	1	14,583
nssv7350052	copy number variation	SAMN01036798	Sequencing	Read depth	2	14,574
nssv7350053	copy number variation	SAMN01036803	Sequencing	Read depth	1	14,603
nssv7350054	copy number variation	SAMN00779933	Sequencing	Read depth	1	14,586
nssv7350055	copy number variation	SAMN00779943	Sequencing	Read depth	2	14,621
nssv7350056	copy number variation	SAMN03783156	Sequencing	Read depth	2	14,581
nssv7350057	copy number variation	SAMN00001044	Sequencing	Read depth	2	14,529
nssv7350058	copy number variation	SAMN00001060	Sequencing	Read depth	1	14,536
nssv7350059	copy number variation	SAMN03783157	Sequencing	Read depth	2	14,647
nssv7350060	copy number variation	SAMN03783158	Sequencing	Read depth	2	14,668
nssv7350061	copy number variation	SAMEA2164453	Sequencing	Read depth	1	14,636
nssv7350062	copy number variation	SAMN00008078	Sequencing	Read depth	1	14,451
nssv7350063	copy number variation	SAMN00008106	Sequencing	Read depth	1	14,556
nssv7350064	copy number variation	SAMEA2164153	Sequencing	Read depth	1	14,487
nssv7350065	copy number variation	SAMN02603792	Sequencing	Read depth	2	14,497
nssv7350066	copy number variation	SAMN01036781	Sequencing	Read depth	1	14,494
nssv7350067	copy number variation	SAMN01036783	Sequencing	Read depth	2	14,544
nssv7350068	copy number variation	SAMEA2164490	Sequencing	Read depth	1	14,660
nssv7350069	copy number variation	SAMN02603829	Sequencing	Read depth	2	14,639
nssv7350439	copy number variation	SAMN03783159	Sequencing	Read depth	1	14,494
nssv7350440	copy number variation	SAMEA1706724	Sequencing	Read depth	1	14,499
nssv7350441	copy number variation	SAMN02603818	Sequencing	Read depth	1	14,636
nssv7350442	copy number variation	SAMN02603821	Sequencing	Read depth	1	14,590
nssv7350443	copy number variation	SAMN03783160	Sequencing	Read depth	2	14,691
nssv7350444	copy number variation	SAMN03783161	Sequencing	Read depth	2	14,683
nssv7350445	copy number variation	SAMEA2164340	Sequencing	Read depth	1	14,576
nssv7350446	copy number variation	SAMEA2164175	Sequencing	Read depth	1	14,530
nssv7350447	copy number variation	SAMN03783162	Sequencing	Read depth	1	14,644
nssv7350448	copy number variation	SAMEA2164380	Sequencing	Read depth	1	14,669
nssv7350449	copy number variation	SAMN03783163	Sequencing	Read depth	2	14,670
nssv7350450	copy number variation	SAMN02603802	Sequencing	Read depth	2	14,703
nssv7350451	copy number variation	SAMN02603804	Sequencing	Read depth	2	14,669
nssv7350452	copy number variation	SAMN03783164	Sequencing	Read depth	2	14,599
nssv7350453	copy number variation	SAMN03783165	Sequencing	Read depth	2	14,756
nssv7350454	copy number variation	SAMN03783166	Sequencing	Read depth	1	14,670
nssv7350455	copy number variation	SAMN03783167	Sequencing	Read depth	2	14,675
nssv7350456	copy number variation	SAMEA1706748	Sequencing	Read depth	2	14,594
nssv7350457	copy number variation	SAMN03783168	Sequencing	Read depth	2	14,640
nssv7350458	copy number variation	SAMN03783169	Sequencing	Read depth	2	14,665
nssv7350459	copy number variation	SAMEA2164395	Sequencing	Read depth	1	14,620
nssv7350460	copy number variation	SAMN03783170	Sequencing	Read depth	2	14,618
nssv7350461	copy number variation	SAMN03783171	Sequencing	Read depth	2	14,288
nssv7350462	copy number variation	SAMN03783172	Sequencing	Read depth	2	14,778
nssv7350463	copy number variation	SAMN03783173	Sequencing	Read depth	2	14,664
nssv7350464	copy number variation	SAMN03783174	Sequencing	Read depth	1	14,675
nssv7350465	copy number variation	SAMEA1487354	Sequencing	Read depth	2	13,715
nssv7350466	copy number variation	SAMEA1706711	Sequencing	Read depth	2	14,408
nssv7350467	copy number variation	SAMN03783175	Sequencing	Read depth	1	14,638
nssv7350468	copy number variation	SAMN03783176	Sequencing	Read depth	1	14,619
nssv7350469	copy number variation	SAMN03783177	Sequencing	Read depth	1	14,680
nssv7350470	copy number variation	SAMN03783178	Sequencing	Read depth	1	14,666
nssv7350471	copy number variation	SAMN02603795	Sequencing	Read depth	2	14,463
nssv7350472	copy number variation	SAMEA2164252	Sequencing	Read depth	1	14,683
nssv7350473	copy number variation	SAMEA2164535	Sequencing	Read depth	1	14,624
nssv7350474	copy number variation	SAMEA1706737	Sequencing	Read depth	2	14,566
nssv7350475	copy number variation	SAMN03783179	Sequencing	Read depth	2	14,391
nssv7350476	copy number variation	SAMEA1706731	Sequencing	Read depth	2	14,659
nssv7350477	copy number variation	SAMEA1706716	Sequencing	Read depth	2	14,592
nssv7350478	copy number variation	SAMEA2164290	Sequencing	Read depth	1	14,669
nssv7350479	copy number variation	SAMEA2164480	Sequencing	Read depth	1	14,476
nssv7350480	copy number variation	SAMN03783180	Sequencing	Read depth	2	14,565
nssv7350481	copy number variation	SAMN03783181	Sequencing	Read depth	1	14,709
nssv7350482	copy number variation	SAMN03783182	Sequencing	Read depth	2	14,676
nssv7350483	copy number variation	SAMN00001633	Sequencing	Read depth	1	14,518
nssv7350484	copy number variation	SAMN00249816	Sequencing	Read depth	2	14,499
nssv7350485	copy number variation	SAMN00249822	Sequencing	Read depth	1	14,670
nssv7350486	copy number variation	SAMN03783183	Sequencing	Read depth	2	14,720
nssv7350487	copy number variation	SAMN00798868	Sequencing	Read depth	1	14,640
nssv7350488	copy number variation	SAMEA2164540	Sequencing	Read depth	1	14,622
nssv7350489	copy number variation	SAMEA1706757	Sequencing	Read depth	2	14,601
nssv7350490	copy number variation	SAMEA2164448	Sequencing	Read depth	1	14,687
nssv7350491	copy number variation	SAMN03783184	Sequencing	Read depth	2	14,718
nssv7350492	copy number variation	SAMEA1706740	Sequencing	Read depth	2	14,672
nssv7350493	copy number variation	SAMEA2164473	Sequencing	Read depth	1	14,607
nssv7350494	copy number variation	SAMEA2164552	Sequencing	Read depth	1	14,643
nssv7350495	copy number variation	SAMEA2164557	Sequencing	Read depth	1	14,620
nssv7350496	copy number variation	SAMEA1706733	Sequencing	Read depth	2	14,466
nssv7350497	copy number variation	SAMEA2164456	Sequencing	Read depth	1	14,524
nssv7350498	copy number variation	SAMN03783185	Sequencing	Read depth	2	14,639
nssv7350499	copy number variation	SAMEA2164550	Sequencing	Read depth	1	14,592
nssv7350500	copy number variation	SAMN03783186	Sequencing	Read depth	1	14,725
nssv7350501	copy number variation	SAMN03783187	Sequencing	Read depth	2	14,688
nssv7350502	copy number variation	SAMEA2164561	Sequencing	Read depth	1	14,640
nssv7350503	copy number variation	SAMN03783188	Sequencing	Read depth	2	14,511
nssv7350504	copy number variation	SAMEA2164415	Sequencing	Read depth	1	14,657
nssv7350505	copy number variation	SAMEA1706717	Sequencing	Read depth	2	14,656
nssv7350506	copy number variation	SAMEA2164522	Sequencing	Read depth	1	14,637
nssv7350507	copy number variation	SAMN03783189	Sequencing	Read depth	2	14,403
nssv7350508	copy number variation	SAMEA2164485	Sequencing	Read depth	1	14,504
nssv7350509	copy number variation	SAMEA2164489	Sequencing	Read depth	1	14,665
nssv7350510	copy number variation	SAMEA2164437	Sequencing	Read depth	1	14,735

Showing 100 of 226

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv7350042	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350043	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350044	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350045	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350046	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350047	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350048	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350049	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350050	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350051	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350052	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350053	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350054	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350055	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350056	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350057	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350058	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350059	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350060	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350061	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350062	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350063	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350064	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350065	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350066	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350067	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350068	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350069	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350439	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350440	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350441	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350442	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350443	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350444	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350445	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350446	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350447	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350448	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350449	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350450	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350451	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350452	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350453	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350454	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350455	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350456	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350457	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350458	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350459	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350460	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350461	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350462	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350463	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350464	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350465	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350466	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350467	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350468	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350469	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350470	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350471	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350472	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350473	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350474	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350475	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350476	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350477	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350478	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350479	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350480	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350481	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350482	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350483	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350484	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350485	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350486	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350487	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350488	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350489	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350490	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350491	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350492	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350493	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350494	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350495	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350496	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350497	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350498	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350499	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350500	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350501	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350502	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350503	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350504	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350505	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350506	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350507	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350508	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350509	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696
nssv7350510	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	7,706,387	7,800,696

Showing 100 of 452

dbVar

Database of genomic structural variation

nsv1187799

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant