nsv1187826
- Organism: Homo sapiens
- Study:nstd113 (Polyak et al. 2015)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:8
- Validation:Not tested
- Clinical Assertions: No
- Region Size:97,473
- Publication(s):Polyak et al. 2015
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 287 SVs from 43 studies. See in: genome view
Overlapping variant regions from other studies: 287 SVs from 43 studies. See in: genome view
Overlapping variant regions from other studies: 89 SVs from 15 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1187826 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 30,601,942 | 30,699,414 |
| nsv1187826 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 30,643,434 | 30,740,906 |
| nsv1187826 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 30,618,438 | 30,715,910 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv7460181 | copy number loss | 31247 | Oligo aCGH | Probe signal intensity | 6 |
| nssv7461859 | copy number loss | 29775 | Oligo aCGH | Probe signal intensity | 6 |
| nssv7462106 | copy number loss | 30084 | Oligo aCGH | Probe signal intensity | nssv7459065 |
| nssv7464386 | copy number loss | 29409 | Oligo aCGH | Probe signal intensity | 5 |
| nssv7466366 | copy number loss | 31840 | Oligo aCGH | Probe signal intensity | 8 |
| nssv7466834 | copy number loss | 30844 | Oligo aCGH | Probe signal intensity | nssv7459461, nssv7469322, nssv7462487 |
| nssv7467392 | copy number loss | 29633 | Oligo aCGH | Probe signal intensity | nssv7475614, nssv7465877 |
| nssv7468992 | copy number loss | 29184 | Oligo aCGH | Probe signal intensity | nssv7463980 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv7460181 | Remapped | Perfect | NC_000003.12:g.(?_ 30601942)_(3069941 4_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 30,601,942 | 30,699,414 |
| nssv7461859 | Remapped | Perfect | NC_000003.12:g.(?_ 30601942)_(3069941 4_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 30,601,942 | 30,699,414 |
| nssv7462106 | Remapped | Perfect | NC_000003.12:g.(?_ 30601942)_(3069941 4_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 30,601,942 | 30,699,414 |
| nssv7464386 | Remapped | Perfect | NC_000003.12:g.(?_ 30601942)_(3069941 4_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 30,601,942 | 30,699,414 |
| nssv7466366 | Remapped | Perfect | NC_000003.12:g.(?_ 30601942)_(3069941 4_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 30,601,942 | 30,699,414 |
| nssv7466834 | Remapped | Perfect | NC_000003.12:g.(?_ 30601942)_(3069941 4_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 30,601,942 | 30,699,414 |
| nssv7467392 | Remapped | Perfect | NC_000003.12:g.(?_ 30601942)_(3069941 4_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 30,601,942 | 30,699,414 |
| nssv7468992 | Remapped | Perfect | NC_000003.12:g.(?_ 30601942)_(3069941 4_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 30,601,942 | 30,699,414 |
| nssv7460181 | Remapped | Perfect | NC_000003.11:g.(?_ 30643434)_(3074090 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 30,643,434 | 30,740,906 |
| nssv7461859 | Remapped | Perfect | NC_000003.11:g.(?_ 30643434)_(3074090 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 30,643,434 | 30,740,906 |
| nssv7462106 | Remapped | Perfect | NC_000003.11:g.(?_ 30643434)_(3074090 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 30,643,434 | 30,740,906 |
| nssv7464386 | Remapped | Perfect | NC_000003.11:g.(?_ 30643434)_(3074090 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 30,643,434 | 30,740,906 |
| nssv7466366 | Remapped | Perfect | NC_000003.11:g.(?_ 30643434)_(3074090 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 30,643,434 | 30,740,906 |
| nssv7466834 | Remapped | Perfect | NC_000003.11:g.(?_ 30643434)_(3074090 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 30,643,434 | 30,740,906 |
| nssv7467392 | Remapped | Perfect | NC_000003.11:g.(?_ 30643434)_(3074090 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 30,643,434 | 30,740,906 |
| nssv7468992 | Remapped | Perfect | NC_000003.11:g.(?_ 30643434)_(3074090 6_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 30,643,434 | 30,740,906 |
| nssv7460181 | Submitted genomic | NC_000003.10:g.(?_ 30618438)_(3071591 0_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 30,618,438 | 30,715,910 | ||
| nssv7461859 | Submitted genomic | NC_000003.10:g.(?_ 30618438)_(3071591 0_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 30,618,438 | 30,715,910 | ||
| nssv7462106 | Submitted genomic | NC_000003.10:g.(?_ 30618438)_(3071591 0_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 30,618,438 | 30,715,910 | ||
| nssv7464386 | Submitted genomic | NC_000003.10:g.(?_ 30618438)_(3071591 0_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 30,618,438 | 30,715,910 | ||
| nssv7466366 | Submitted genomic | NC_000003.10:g.(?_ 30618438)_(3071591 0_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 30,618,438 | 30,715,910 | ||
| nssv7466834 | Submitted genomic | NC_000003.10:g.(?_ 30618438)_(3071591 0_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 30,618,438 | 30,715,910 | ||
| nssv7467392 | Submitted genomic | NC_000003.10:g.(?_ 30618438)_(3071591 0_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 30,618,438 | 30,715,910 | ||
| nssv7468992 | Submitted genomic | NC_000003.10:g.(?_ 30618438)_(3071591 0_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 30,618,438 | 30,715,910 |