nsv1188763
- Organism: Homo sapiens
- Study:nstd113 (Polyak et al. 2015)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:3
- Validation:Not tested
- Clinical Assertions: No
- Region Size:203,953
- Publication(s):Polyak et al. 2015
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1157 SVs from 87 studies. See in: genome view
Overlapping variant regions from other studies: 1157 SVs from 87 studies. See in: genome view
Overlapping variant regions from other studies: 363 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1188763 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000016.10 | Chr16 | 28,821,974 | 29,025,926 |
| nsv1188763 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000016.9 | Chr16 | 28,833,295 | 29,037,247 |
| nsv1188763 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000016.8 | Chr16 | 28,740,796 | 28,944,748 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv7460707 | copy number loss | 13431 | Oligo aCGH | Probe signal intensity | nssv7459465, nssv7460744 |
| nssv7472155 | copy number loss | 11753 | Oligo aCGH | Probe signal intensity | |
| nssv7474953 | copy number loss | 11708 | Oligo aCGH | Probe signal intensity | nssv7460240 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv7460707 | Remapped | Perfect | NC_000016.10:g.(?_ 28821974)_(2902592 6_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 28,821,974 | 29,025,926 |
| nssv7472155 | Remapped | Perfect | NC_000016.10:g.(?_ 28821974)_(2902592 6_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 28,821,974 | 29,025,926 |
| nssv7474953 | Remapped | Perfect | NC_000016.10:g.(?_ 28821974)_(2902592 6_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 28,821,974 | 29,025,926 |
| nssv7460707 | Remapped | Perfect | NC_000016.9:g.(?_2 8833295)_(29037247 _?)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 28,833,295 | 29,037,247 |
| nssv7472155 | Remapped | Perfect | NC_000016.9:g.(?_2 8833295)_(29037247 _?)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 28,833,295 | 29,037,247 |
| nssv7474953 | Remapped | Perfect | NC_000016.9:g.(?_2 8833295)_(29037247 _?)del | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 28,833,295 | 29,037,247 |
| nssv7460707 | Submitted genomic | NC_000016.8:g.(?_2 8740796)_(28944748 _?)del | NCBI36 (hg18) | NC_000016.8 | Chr16 | 28,740,796 | 28,944,748 | ||
| nssv7472155 | Submitted genomic | NC_000016.8:g.(?_2 8740796)_(28944748 _?)del | NCBI36 (hg18) | NC_000016.8 | Chr16 | 28,740,796 | 28,944,748 | ||
| nssv7474953 | Submitted genomic | NC_000016.8:g.(?_2 8740796)_(28944748 _?)del | NCBI36 (hg18) | NC_000016.8 | Chr16 | 28,740,796 | 28,944,748 |