nsv1191416
- Organism: Homo sapiens
- Study:nstd113 (Polyak et al. 2015)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:15
- Validation:Not tested
- Clinical Assertions: No
- Region Size:2,747,097
- Publication(s):Polyak et al. 2015
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 11080 SVs from 132 studies. See in: genome view
Overlapping variant regions from other studies: 10115 SVs from 129 studies. See in: genome view
Overlapping variant regions from other studies: 3604 SVs from 35 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1191416 | Remapped | Pass | GRCh38.p12 | Primary Assembly | First Pass | NC_000022.11 | Chr22 | 18,339,130 | 21,086,226 |
| nsv1191416 | Remapped | Good | GRCh37.p13 | Primary Assembly | First Pass | NC_000022.10 | Chr22 | 18,919,941 | 21,440,515 |
| nsv1191416 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000022.9 | Chr22 | 17,299,941 | 19,770,515 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv7462632 | copy number loss | 19325 | Oligo aCGH | Probe signal intensity | nssv7460109 |
| nssv7463627 | copy number loss | 24273 | Oligo aCGH | Probe signal intensity | nssv7466491 |
| nssv7464465 | copy number loss | 14988 | Oligo aCGH | Probe signal intensity | nssv7462756 |
| nssv7464800 | copy number loss | 23187 | Oligo aCGH | Probe signal intensity | nssv7466025 |
| nssv7464843 | copy number loss | 24308 | Oligo aCGH | Probe signal intensity | nssv7471421 |
| nssv7465217 | copy number loss | 19267 | Oligo aCGH | Probe signal intensity | nssv7470738 |
| nssv7466552 | copy number loss | 15144 | Oligo aCGH | Probe signal intensity | nssv7469617 |
| nssv7467060 | copy number loss | 24473 | Oligo aCGH | Probe signal intensity | nssv7471507, nssv7465860 |
| nssv7467233 | copy number loss | 20745 | Oligo aCGH | Probe signal intensity | nssv7461994, nssv7467086 |
| nssv7468761 | copy number gain | 30139 | Oligo aCGH | Probe signal intensity | 5 |
| nssv7472388 | copy number gain | 16699 | Oligo aCGH | Probe signal intensity | nssv7459304, nssv7471009 |
| nssv7472782 | copy number loss | 16715 | Oligo aCGH | Probe signal intensity | nssv7464012 |
| nssv7473561 | copy number loss | 31862 | Oligo aCGH | Probe signal intensity | nssv7467269, nssv7470612, nssv7468798 |
| nssv7473720 | copy number loss | 18026 | Oligo aCGH | Probe signal intensity | nssv7465516 |
| nssv7474950 | copy number gain | 30496 | Oligo aCGH | Probe signal intensity | nssv7466623 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv7462632 | Remapped | Pass | NC_000022.11:g.(?_ 18339130)_(2108622 6_?)del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,339,130 | 21,086,226 |
| nssv7463627 | Remapped | Pass | NC_000022.11:g.(?_ 18339130)_(2108622 6_?)del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,339,130 | 21,086,226 |
| nssv7464465 | Remapped | Pass | NC_000022.11:g.(?_ 18339130)_(2108622 6_?)del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,339,130 | 21,086,226 |
| nssv7464800 | Remapped | Pass | NC_000022.11:g.(?_ 18339130)_(2108622 6_?)del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,339,130 | 21,086,226 |
| nssv7464843 | Remapped | Pass | NC_000022.11:g.(?_ 18339130)_(2108622 6_?)del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,339,130 | 21,086,226 |
| nssv7465217 | Remapped | Pass | NC_000022.11:g.(?_ 18339130)_(2108622 6_?)del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,339,130 | 21,086,226 |
| nssv7466552 | Remapped | Pass | NC_000022.11:g.(?_ 18339130)_(2108622 6_?)del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,339,130 | 21,086,226 |
| nssv7467060 | Remapped | Pass | NC_000022.11:g.(?_ 18339130)_(2108622 6_?)del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,339,130 | 21,086,226 |
| nssv7467233 | Remapped | Pass | NC_000022.11:g.(?_ 18339130)_(2108622 6_?)del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,339,130 | 21,086,226 |
| nssv7468761 | Remapped | Pass | NC_000022.11:g.(?_ 18339130)_(2108622 6_?)dup | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,339,130 | 21,086,226 |
| nssv7472388 | Remapped | Pass | NC_000022.11:g.(?_ 18339130)_(2108622 6_?)dup | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,339,130 | 21,086,226 |
| nssv7472782 | Remapped | Pass | NC_000022.11:g.(?_ 18339130)_(2108622 6_?)del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,339,130 | 21,086,226 |
| nssv7473561 | Remapped | Pass | NC_000022.11:g.(?_ 18339130)_(2108622 6_?)del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,339,130 | 21,086,226 |
| nssv7473720 | Remapped | Pass | NC_000022.11:g.(?_ 18339130)_(2108622 6_?)del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,339,130 | 21,086,226 |
| nssv7474950 | Remapped | Pass | NC_000022.11:g.(?_ 18339130)_(2108622 6_?)dup | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 18,339,130 | 21,086,226 |
| nssv7462632 | Remapped | Good | NC_000022.10:g.(?_ 18919941)_(2144051 5_?)del | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 18,919,941 | 21,440,515 |
| nssv7463627 | Remapped | Good | NC_000022.10:g.(?_ 18919941)_(2144051 5_?)del | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 18,919,941 | 21,440,515 |
| nssv7464465 | Remapped | Good | NC_000022.10:g.(?_ 18919941)_(2144051 5_?)del | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 18,919,941 | 21,440,515 |
| nssv7464800 | Remapped | Good | NC_000022.10:g.(?_ 18919941)_(2144051 5_?)del | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 18,919,941 | 21,440,515 |
| nssv7464843 | Remapped | Good | NC_000022.10:g.(?_ 18919941)_(2144051 5_?)del | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 18,919,941 | 21,440,515 |
| nssv7465217 | Remapped | Good | NC_000022.10:g.(?_ 18919941)_(2144051 5_?)del | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 18,919,941 | 21,440,515 |
| nssv7466552 | Remapped | Good | NC_000022.10:g.(?_ 18919941)_(2144051 5_?)del | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 18,919,941 | 21,440,515 |
| nssv7467060 | Remapped | Good | NC_000022.10:g.(?_ 18919941)_(2144051 5_?)del | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 18,919,941 | 21,440,515 |
| nssv7467233 | Remapped | Good | NC_000022.10:g.(?_ 18919941)_(2144051 5_?)del | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 18,919,941 | 21,440,515 |
| nssv7468761 | Remapped | Good | NC_000022.10:g.(?_ 18919941)_(2144051 5_?)dup | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 18,919,941 | 21,440,515 |
| nssv7472388 | Remapped | Good | NC_000022.10:g.(?_ 18919941)_(2144051 5_?)dup | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 18,919,941 | 21,440,515 |
| nssv7472782 | Remapped | Good | NC_000022.10:g.(?_ 18919941)_(2144051 5_?)del | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 18,919,941 | 21,440,515 |
| nssv7473561 | Remapped | Good | NC_000022.10:g.(?_ 18919941)_(2144051 5_?)del | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 18,919,941 | 21,440,515 |
| nssv7473720 | Remapped | Good | NC_000022.10:g.(?_ 18919941)_(2144051 5_?)del | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 18,919,941 | 21,440,515 |
| nssv7474950 | Remapped | Good | NC_000022.10:g.(?_ 18919941)_(2144051 5_?)dup | GRCh37.p13 | First Pass | NC_000022.10 | Chr22 | 18,919,941 | 21,440,515 |
| nssv7462632 | Submitted genomic | NC_000022.9:g.(?_1 7299941)_(19770515 _?)del | NCBI36 (hg18) | NC_000022.9 | Chr22 | 17,299,941 | 19,770,515 | ||
| nssv7463627 | Submitted genomic | NC_000022.9:g.(?_1 7299941)_(19770515 _?)del | NCBI36 (hg18) | NC_000022.9 | Chr22 | 17,299,941 | 19,770,515 | ||
| nssv7464465 | Submitted genomic | NC_000022.9:g.(?_1 7299941)_(19770515 _?)del | NCBI36 (hg18) | NC_000022.9 | Chr22 | 17,299,941 | 19,770,515 | ||
| nssv7464800 | Submitted genomic | NC_000022.9:g.(?_1 7299941)_(19770515 _?)del | NCBI36 (hg18) | NC_000022.9 | Chr22 | 17,299,941 | 19,770,515 | ||
| nssv7464843 | Submitted genomic | NC_000022.9:g.(?_1 7299941)_(19770515 _?)del | NCBI36 (hg18) | NC_000022.9 | Chr22 | 17,299,941 | 19,770,515 | ||
| nssv7465217 | Submitted genomic | NC_000022.9:g.(?_1 7299941)_(19770515 _?)del | NCBI36 (hg18) | NC_000022.9 | Chr22 | 17,299,941 | 19,770,515 | ||
| nssv7466552 | Submitted genomic | NC_000022.9:g.(?_1 7299941)_(19770515 _?)del | NCBI36 (hg18) | NC_000022.9 | Chr22 | 17,299,941 | 19,770,515 | ||
| nssv7467060 | Submitted genomic | NC_000022.9:g.(?_1 7299941)_(19770515 _?)del | NCBI36 (hg18) | NC_000022.9 | Chr22 | 17,299,941 | 19,770,515 | ||
| nssv7467233 | Submitted genomic | NC_000022.9:g.(?_1 7299941)_(19770515 _?)del | NCBI36 (hg18) | NC_000022.9 | Chr22 | 17,299,941 | 19,770,515 | ||
| nssv7468761 | Submitted genomic | NC_000022.9:g.(?_1 7299941)_(19770515 _?)dup | NCBI36 (hg18) | NC_000022.9 | Chr22 | 17,299,941 | 19,770,515 | ||
| nssv7472388 | Submitted genomic | NC_000022.9:g.(?_1 7299941)_(19770515 _?)dup | NCBI36 (hg18) | NC_000022.9 | Chr22 | 17,299,941 | 19,770,515 | ||
| nssv7472782 | Submitted genomic | NC_000022.9:g.(?_1 7299941)_(19770515 _?)del | NCBI36 (hg18) | NC_000022.9 | Chr22 | 17,299,941 | 19,770,515 | ||
| nssv7473561 | Submitted genomic | NC_000022.9:g.(?_1 7299941)_(19770515 _?)del | NCBI36 (hg18) | NC_000022.9 | Chr22 | 17,299,941 | 19,770,515 | ||
| nssv7473720 | Submitted genomic | NC_000022.9:g.(?_1 7299941)_(19770515 _?)del | NCBI36 (hg18) | NC_000022.9 | Chr22 | 17,299,941 | 19,770,515 | ||
| nssv7474950 | Submitted genomic | NC_000022.9:g.(?_1 7299941)_(19770515 _?)dup | NCBI36 (hg18) | NC_000022.9 | Chr22 | 17,299,941 | 19,770,515 |