nsv1191705
- Organism: Homo sapiens
- Study:nstd113 (Polyak et al. 2015)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:584,853
- Publication(s):Polyak et al. 2015
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1658 SVs from 82 studies. See in: genome view
Overlapping variant regions from other studies: 1658 SVs from 82 studies. See in: genome view
Overlapping variant regions from other studies: 551 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1191705 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 84,019,893 | 84,604,745 |
| nsv1191705 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 84,069,044 | 84,653,896 |
| nsv1191705 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 84,151,734 | 84,736,586 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv7465253 | copy number gain | 38389 | Oligo aCGH | Probe signal intensity | nssv7470396, nssv7474931 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv7465253 | Remapped | Perfect | NC_000003.12:g.(?_ 84019893)_(8460474 5_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 84,019,893 | 84,604,745 |
| nssv7465253 | Remapped | Perfect | NC_000003.11:g.(?_ 84069044)_(8465389 6_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 84,069,044 | 84,653,896 |
| nssv7465253 | Submitted genomic | NC_000003.10:g.(?_ 84151734)_(8473658 6_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 84,151,734 | 84,736,586 |