nsv1592296
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:19
- Description:MOTIF=[TTTG],NS=[301],REF=[4.75],RL=[19],RPA=[
3.75],RU=[TTTG],QUAL=[625152] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 74 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 74 SVs from 19 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1592296 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 66,060,795 | 66,060,813 |
| nsv1592296 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000011.9 | Chr11 | 65,828,266 | 65,828,284 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv9353469 | short tandem repeat | (TTTG) 3.75 | Sequencing | Genotyping |
| nssv9353470 | short tandem repeat | (TTTG) 4.75 (ref) | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv9353469 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 66,060,795 | 66,060,813 |
| nssv9353470 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 66,060,795 | 66,060,813 |
| nssv9353469 | Submitted genomic | GRCh37 (hg19) | NC_000011.9 | Chr11 | 65,828,266 | 65,828,284 | ||
| nssv9353470 | Submitted genomic | GRCh37 (hg19) | NC_000011.9 | Chr11 | 65,828,266 | 65,828,284 |