nsv1807397
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:16
- Validation:Not tested
- Clinical Assertions: No
- Region Size:79
- Description:MOTIF=[AGAT],NS=[301],REF=[19.75],RL=[79],RPA=
[11.75,12.0,12.75,13.0,13.75,14.0,14.75,15.0,15.75,16.0,16
.75,17.75,18.75,20.75,21.75],RU=[AGAT],QUAL=[60629.1] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 140 SVs from 28 studies. See in: genome view
Overlapping variant regions from other studies: 140 SVs from 28 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1807397 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 81,933,543 | 81,933,621 |
| nsv1807397 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000015.9 | Chr15 | 82,225,884 | 82,225,962 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv10123874 | short tandem repeat | (AGAT) 16.75 | Sequencing | Genotyping |
| nssv10123875 | short tandem repeat | (AGAT) 13 | Sequencing | Genotyping |
| nssv10123876 | short tandem repeat | (AGAT) 15 | Sequencing | Genotyping |
| nssv10123877 | short tandem repeat | (AGAT) 16 | Sequencing | Genotyping |
| nssv10123878 | short tandem repeat | (AGAT) 14 | Sequencing | Genotyping |
| nssv10123879 | short tandem repeat | (AGAT) 21.75 | Sequencing | Genotyping |
| nssv10123880 | short tandem repeat | (AGAT) 12 | Sequencing | Genotyping |
| nssv10123881 | short tandem repeat | (AGAT) 18.75 | Sequencing | Genotyping |
| nssv10123882 | short tandem repeat | (AGAT) 14.75 | Sequencing | Genotyping |
| nssv10123883 | short tandem repeat | (AGAT) 17.75 | Sequencing | Genotyping |
| nssv10123884 | short tandem repeat | (AGAT) 11.75 | Sequencing | Genotyping |
| nssv10123885 | short tandem repeat | (AGAT) 13.75 | Sequencing | Genotyping |
| nssv10123886 | short tandem repeat | (AGAT) 15.75 | Sequencing | Genotyping |
| nssv10123887 | short tandem repeat | (AGAT) 20.75 | Sequencing | Genotyping |
| nssv10123888 | short tandem repeat | (AGAT) 12.75 | Sequencing | Genotyping |
| nssv10123889 | short tandem repeat | (AGAT) 19.75 (ref) | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv10123874 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 81,933,543 | 81,933,621 |
| nssv10123875 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 81,933,543 | 81,933,621 |
| nssv10123876 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 81,933,543 | 81,933,621 |
| nssv10123877 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 81,933,543 | 81,933,621 |
| nssv10123878 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 81,933,543 | 81,933,621 |
| nssv10123879 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 81,933,543 | 81,933,621 |
| nssv10123880 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 81,933,543 | 81,933,621 |
| nssv10123881 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 81,933,543 | 81,933,621 |
| nssv10123882 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 81,933,543 | 81,933,621 |
| nssv10123883 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 81,933,543 | 81,933,621 |
| nssv10123884 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 81,933,543 | 81,933,621 |
| nssv10123885 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 81,933,543 | 81,933,621 |
| nssv10123886 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 81,933,543 | 81,933,621 |
| nssv10123887 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 81,933,543 | 81,933,621 |
| nssv10123888 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 81,933,543 | 81,933,621 |
| nssv10123889 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 81,933,543 | 81,933,621 |
| nssv10123874 | Submitted genomic | GRCh37 (hg19) | NC_000015.9 | Chr15 | 82,225,884 | 82,225,962 | ||
| nssv10123875 | Submitted genomic | GRCh37 (hg19) | NC_000015.9 | Chr15 | 82,225,884 | 82,225,962 | ||
| nssv10123876 | Submitted genomic | GRCh37 (hg19) | NC_000015.9 | Chr15 | 82,225,884 | 82,225,962 | ||
| nssv10123877 | Submitted genomic | GRCh37 (hg19) | NC_000015.9 | Chr15 | 82,225,884 | 82,225,962 | ||
| nssv10123878 | Submitted genomic | GRCh37 (hg19) | NC_000015.9 | Chr15 | 82,225,884 | 82,225,962 | ||
| nssv10123879 | Submitted genomic | GRCh37 (hg19) | NC_000015.9 | Chr15 | 82,225,884 | 82,225,962 | ||
| nssv10123880 | Submitted genomic | GRCh37 (hg19) | NC_000015.9 | Chr15 | 82,225,884 | 82,225,962 | ||
| nssv10123881 | Submitted genomic | GRCh37 (hg19) | NC_000015.9 | Chr15 | 82,225,884 | 82,225,962 | ||
| nssv10123882 | Submitted genomic | GRCh37 (hg19) | NC_000015.9 | Chr15 | 82,225,884 | 82,225,962 | ||
| nssv10123883 | Submitted genomic | GRCh37 (hg19) | NC_000015.9 | Chr15 | 82,225,884 | 82,225,962 | ||
| nssv10123884 | Submitted genomic | GRCh37 (hg19) | NC_000015.9 | Chr15 | 82,225,884 | 82,225,962 | ||
| nssv10123885 | Submitted genomic | GRCh37 (hg19) | NC_000015.9 | Chr15 | 82,225,884 | 82,225,962 | ||
| nssv10123886 | Submitted genomic | GRCh37 (hg19) | NC_000015.9 | Chr15 | 82,225,884 | 82,225,962 | ||
| nssv10123887 | Submitted genomic | GRCh37 (hg19) | NC_000015.9 | Chr15 | 82,225,884 | 82,225,962 | ||
| nssv10123888 | Submitted genomic | GRCh37 (hg19) | NC_000015.9 | Chr15 | 82,225,884 | 82,225,962 | ||
| nssv10123889 | Submitted genomic | GRCh37 (hg19) | NC_000015.9 | Chr15 | 82,225,884 | 82,225,962 |