nsv1958717
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:6
- Validation:Not tested
- Clinical Assertions: No
- Region Size:17
- Description:MOTIF=[A],NS=[299],REF=[17.0],RL=[17],RPA=[14.
0,15.0,16.0,18.0,19.0],RU=[A],QUAL=[87144.9] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 114 SVs from 17 studies. See in: genome view
Overlapping variant regions from other studies: 114 SVs from 17 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1958717 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000019.10 | Chr19 | 39,482,660 | 39,482,676 |
| nsv1958717 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000019.9 | Chr19 | 39,973,300 | 39,973,316 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv10692554 | short tandem repeat | (A) 16 | Sequencing | Genotyping |
| nssv10692555 | short tandem repeat | (A) 18 | Sequencing | Genotyping |
| nssv10692556 | short tandem repeat | (A) 15 | Sequencing | Genotyping |
| nssv10692557 | short tandem repeat | (A) 19 | Sequencing | Genotyping |
| nssv10692558 | short tandem repeat | (A) 14 | Sequencing | Genotyping |
| nssv10692559 | short tandem repeat | (A) 17 (ref) | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv10692554 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 39,482,660 | 39,482,676 |
| nssv10692555 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 39,482,660 | 39,482,676 |
| nssv10692556 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 39,482,660 | 39,482,676 |
| nssv10692557 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 39,482,660 | 39,482,676 |
| nssv10692558 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 39,482,660 | 39,482,676 |
| nssv10692559 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 39,482,660 | 39,482,676 |
| nssv10692554 | Submitted genomic | GRCh37 (hg19) | NC_000019.9 | Chr19 | 39,973,300 | 39,973,316 | ||
| nssv10692555 | Submitted genomic | GRCh37 (hg19) | NC_000019.9 | Chr19 | 39,973,300 | 39,973,316 | ||
| nssv10692556 | Submitted genomic | GRCh37 (hg19) | NC_000019.9 | Chr19 | 39,973,300 | 39,973,316 | ||
| nssv10692557 | Submitted genomic | GRCh37 (hg19) | NC_000019.9 | Chr19 | 39,973,300 | 39,973,316 | ||
| nssv10692558 | Submitted genomic | GRCh37 (hg19) | NC_000019.9 | Chr19 | 39,973,300 | 39,973,316 | ||
| nssv10692559 | Submitted genomic | GRCh37 (hg19) | NC_000019.9 | Chr19 | 39,973,300 | 39,973,316 |