nsv1958933
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:25
- Description:MOTIF=[TTTATT],NS=[300],REF=[4.16667],RL=[25],
RPA=[4.33333],RU=[TTTATT],QUAL=[492514] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 114 SVs from 18 studies. See in: genome view
Overlapping variant regions from other studies: 114 SVs from 18 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1958933 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000019.10 | Chr19 | 39,483,847 | 39,483,871 |
| nsv1958933 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000019.9 | Chr19 | 39,974,487 | 39,974,511 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv10692560 | short tandem repeat | (TTTATT) 4.33 | Sequencing | Genotyping |
| nssv10692561 | short tandem repeat | (TTTATT) 4.17 (ref) | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv10692560 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 39,483,847 | 39,483,871 |
| nssv10692561 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 39,483,847 | 39,483,871 |
| nssv10692560 | Submitted genomic | GRCh37 (hg19) | NC_000019.9 | Chr19 | 39,974,487 | 39,974,511 | ||
| nssv10692561 | Submitted genomic | GRCh37 (hg19) | NC_000019.9 | Chr19 | 39,974,487 | 39,974,511 |