nsv1958935
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:18
- Description:MOTIF=[T],NS=[300],REF=[18.0],RL=[18],RPA=[19.
0],RU=[T],QUAL=[165875] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 117 SVs from 18 studies. See in: genome view
Overlapping variant regions from other studies: 117 SVs from 18 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1958935 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000019.10 | Chr19 | 39,493,254 | 39,493,271 |
| nsv1958935 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000019.9 | Chr19 | 39,983,894 | 39,983,911 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv10692581 | short tandem repeat | (T) 19 | Sequencing | Genotyping |
| nssv10692582 | short tandem repeat | (T) 18 (ref) | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv10692581 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 39,493,254 | 39,493,271 |
| nssv10692582 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 39,493,254 | 39,493,271 |
| nssv10692581 | Submitted genomic | GRCh37 (hg19) | NC_000019.9 | Chr19 | 39,983,894 | 39,983,911 | ||
| nssv10692582 | Submitted genomic | GRCh37 (hg19) | NC_000019.9 | Chr19 | 39,983,894 | 39,983,911 |