nsv1958936
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:3
- Validation:Not tested
- Clinical Assertions: No
- Region Size:12
- Description:MOTIF=[T],NS=[301],REF=[12.0],RL=[12],RPA=[11.
0,13.0],RU=[T],QUAL=[137993] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 118 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 118 SVs from 19 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1958936 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000019.10 | Chr19 | 39,494,277 | 39,494,288 |
| nsv1958936 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000019.9 | Chr19 | 39,984,917 | 39,984,928 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv10692583 | short tandem repeat | (T) 13 | Sequencing | Genotyping |
| nssv10692584 | short tandem repeat | (T) 11 | Sequencing | Genotyping |
| nssv10692585 | short tandem repeat | (T) 12 (ref) | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv10692583 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 39,494,277 | 39,494,288 |
| nssv10692584 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 39,494,277 | 39,494,288 |
| nssv10692585 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 39,494,277 | 39,494,288 |
| nssv10692583 | Submitted genomic | GRCh37 (hg19) | NC_000019.9 | Chr19 | 39,984,917 | 39,984,928 | ||
| nssv10692584 | Submitted genomic | GRCh37 (hg19) | NC_000019.9 | Chr19 | 39,984,917 | 39,984,928 | ||
| nssv10692585 | Submitted genomic | GRCh37 (hg19) | NC_000019.9 | Chr19 | 39,984,917 | 39,984,928 |