nsv2162877
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:18
- Description:MOTIF=[AAAAT],NS=[301],REF=[3.6],RL=[18],RU=[A
AAAT],RPA=[],QUAL=[255196] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 69 SVs from 14 studies. See in: genome view
Overlapping variant regions from other studies: 69 SVs from 14 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv2162877 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 39,406,292 | 39,406,309 |
| nsv2162877 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000003.11 | Chr3 | 39,447,783 | 39,447,800 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv11319429 | short tandem repeat | (AAAAT) 3.6 (ref) | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv11319429 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 39,406,292 | 39,406,309 |
| nssv11319429 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 39,447,783 | 39,447,800 |