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dbVar

Database of genomic structural variation

nsv2165304

Organism: Homo sapiens

Study:nstd128 (Mallick et al. 2016)
Variant Type:short tandem repeat
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:11

Description:MOTIF=[A],NS=[301],REF=[11.0],RL=[11],RU=[A],R
PA=[],QUAL=[183185]
Publication(s):Mallick et al. 2016

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 66 SVs from 14 studies. See in: genome view

Remapped(Score: Perfect):39,404,730-39,404,740

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv2165304	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	39,404,730	39,404,740
nsv2165304	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000003.11	Chr3	39,446,221	39,446,231

Variant Call Information

Variant Call ID	Type	Repeat Motif	Method	Analysis
nssv11154053	short tandem repeat	(A) 11 (ref)	Sequencing	Genotyping

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv11154053	Remapped	Perfect	GRCh38.p12	First Pass	NC_000003.12	Chr3	39,404,730	39,404,740
nssv11154053	Submitted genomic		GRCh37 (hg19)		NC_000003.11	Chr3	39,446,221	39,446,231

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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