nsv2165305
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:5
- Validation:Not tested
- Clinical Assertions: No
- Region Size:20
- Description:MOTIF=[A],NS=[300],REF=[20.0],RL=[20],RU=[A],R
PA=[18.0,19.0,21.0,22.0],QUAL=[42247.5] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 71 SVs from 15 studies. See in: genome view
Overlapping variant regions from other studies: 71 SVs from 15 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv2165305 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 39,409,085 | 39,409,104 |
| nsv2165305 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000003.11 | Chr3 | 39,450,576 | 39,450,595 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv11149756 | short tandem repeat | (A) 19 | Sequencing | Genotyping |
| nssv11149757 | short tandem repeat | (A) 18 | Sequencing | Genotyping |
| nssv11149758 | short tandem repeat | (A) 20 (ref) | Sequencing | Genotyping |
| nssv11309026 | short tandem repeat | (A) 22 | Sequencing | Genotyping |
| nssv11319430 | short tandem repeat | (A) 21 | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv11149756 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 39,409,085 | 39,409,104 |
| nssv11149757 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 39,409,085 | 39,409,104 |
| nssv11149758 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 39,409,085 | 39,409,104 |
| nssv11309026 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 39,409,085 | 39,409,104 |
| nssv11319430 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 39,409,085 | 39,409,104 |
| nssv11149756 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 39,450,576 | 39,450,595 | ||
| nssv11149757 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 39,450,576 | 39,450,595 | ||
| nssv11149758 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 39,450,576 | 39,450,595 | ||
| nssv11309026 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 39,450,576 | 39,450,595 | ||
| nssv11319430 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 39,450,576 | 39,450,595 |