nsv2210483
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:13
- Validation:Not tested
- Clinical Assertions: No
- Region Size:45
- Description:MOTIF=[TG],NS=[300],REF=[22.5],RL=[45],RU=[TG]
,RPA=[14.5,15.5,16.5,17.5,18.5,19.5,20.5,21.5,23.5,24.5,25
.5,26.5],QUAL=[49235.9] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 83 SVs from 24 studies. See in: genome view
Overlapping variant regions from other studies: 83 SVs from 24 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv2210483 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 13,491,069 | 13,491,113 |
| nsv2210483 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000003.11 | Chr3 | 13,532,569 | 13,532,613 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv11243558 | short tandem repeat | (TG) 14.5 | Sequencing | Genotyping |
| nssv11243559 | short tandem repeat | (TG) 15.5 | Sequencing | Genotyping |
| nssv11243560 | short tandem repeat | (TG) 21.5 | Sequencing | Genotyping |
| nssv11243561 | short tandem repeat | (TG) 23.5 | Sequencing | Genotyping |
| nssv11243562 | short tandem repeat | (TG) 24.5 | Sequencing | Genotyping |
| nssv11243563 | short tandem repeat | (TG) 18.5 | Sequencing | Genotyping |
| nssv11243564 | short tandem repeat | (TG) 22.5 (ref) | Sequencing | Genotyping |
| nssv11395435 | short tandem repeat | (TG) 19.5 | Sequencing | Genotyping |
| nssv11395436 | short tandem repeat | (TG) 16.5 | Sequencing | Genotyping |
| nssv11395437 | short tandem repeat | (TG) 25.5 | Sequencing | Genotyping |
| nssv11408558 | short tandem repeat | (TG) 20.5 | Sequencing | Genotyping |
| nssv11408559 | short tandem repeat | (TG) 17.5 | Sequencing | Genotyping |
| nssv11408560 | short tandem repeat | (TG) 26.5 | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv11243558 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 13,491,069 | 13,491,113 |
| nssv11243559 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 13,491,069 | 13,491,113 |
| nssv11243560 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 13,491,069 | 13,491,113 |
| nssv11243561 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 13,491,069 | 13,491,113 |
| nssv11243562 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 13,491,069 | 13,491,113 |
| nssv11243563 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 13,491,069 | 13,491,113 |
| nssv11243564 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 13,491,069 | 13,491,113 |
| nssv11395435 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 13,491,069 | 13,491,113 |
| nssv11395436 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 13,491,069 | 13,491,113 |
| nssv11395437 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 13,491,069 | 13,491,113 |
| nssv11408558 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 13,491,069 | 13,491,113 |
| nssv11408559 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 13,491,069 | 13,491,113 |
| nssv11408560 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 13,491,069 | 13,491,113 |
| nssv11243558 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 13,532,569 | 13,532,613 | ||
| nssv11243559 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 13,532,569 | 13,532,613 | ||
| nssv11243560 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 13,532,569 | 13,532,613 | ||
| nssv11243561 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 13,532,569 | 13,532,613 | ||
| nssv11243562 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 13,532,569 | 13,532,613 | ||
| nssv11243563 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 13,532,569 | 13,532,613 | ||
| nssv11243564 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 13,532,569 | 13,532,613 | ||
| nssv11395435 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 13,532,569 | 13,532,613 | ||
| nssv11395436 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 13,532,569 | 13,532,613 | ||
| nssv11395437 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 13,532,569 | 13,532,613 | ||
| nssv11408558 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 13,532,569 | 13,532,613 | ||
| nssv11408559 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 13,532,569 | 13,532,613 | ||
| nssv11408560 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 13,532,569 | 13,532,613 |