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dbVar

Database of genomic structural variation

nsv2210998

Organism: Homo sapiens

Study:nstd128 (Mallick et al. 2016)
Variant Type:short tandem repeat
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:30

Description:MOTIF=[GCCCC],NS=[288],REF=[6.0],RL=[30],RU=[G
CCCC],RPA=[],QUAL=[114282]
Publication(s):Mallick et al. 2016

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 78 SVs from 22 studies. See in: genome view

Remapped(Score: Perfect):13,480,276-13,480,305

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv2210998	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	13,480,276	13,480,305
nsv2210998	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000003.11	Chr3	13,521,776	13,521,805

Variant Call Information

Variant Call ID	Type	Repeat Motif	Method	Analysis
nssv11395362	short tandem repeat	(GCCCC) 6 (ref)	Sequencing	Genotyping

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv11395362	Remapped	Perfect	GRCh38.p12	First Pass	NC_000003.12	Chr3	13,480,276	13,480,305
nssv11395362	Submitted genomic		GRCh37 (hg19)		NC_000003.11	Chr3	13,521,776	13,521,805

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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