nsv2213326
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:4
- Validation:Not tested
- Clinical Assertions: No
- Region Size:13
- Description:MOTIF=[A],NS=[301],REF=[13.0],RL=[13],RU=[A],R
PA=[12.0,14.0,15.0],QUAL=[236212] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 78 SVs from 23 studies. See in: genome view
Overlapping variant regions from other studies: 78 SVs from 23 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv2213326 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 13,483,076 | 13,483,088 |
| nsv2213326 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000003.11 | Chr3 | 13,524,576 | 13,524,588 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv11242634 | short tandem repeat | (A) 13 (ref) | Sequencing | Genotyping |
| nssv11395385 | short tandem repeat | (A) 14 | Sequencing | Genotyping |
| nssv11395386 | short tandem repeat | (A) 12 | Sequencing | Genotyping |
| nssv11408506 | short tandem repeat | (A) 15 | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv11242634 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 13,483,076 | 13,483,088 |
| nssv11395385 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 13,483,076 | 13,483,088 |
| nssv11395386 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 13,483,076 | 13,483,088 |
| nssv11408506 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 13,483,076 | 13,483,088 |
| nssv11242634 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 13,524,576 | 13,524,588 | ||
| nssv11395385 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 13,524,576 | 13,524,588 | ||
| nssv11395386 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 13,524,576 | 13,524,588 | ||
| nssv11408506 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 13,524,576 | 13,524,588 |