nsv2215181
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:22
- Description:MOTIF=[GGGGGT],NS=[301],REF=[3.66667],RL=[22],
RU=[GGGGGT],RPA=[3.5],QUAL=[340866] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 83 SVs from 23 studies. See in: genome view
Overlapping variant regions from other studies: 83 SVs from 23 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv2215181 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 13,506,603 | 13,506,624 |
| nsv2215181 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000003.11 | Chr3 | 13,548,103 | 13,548,124 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv11395482 | short tandem repeat | (GGGGGT) 3.67 (ref) | Sequencing | Genotyping |
| nssv11408608 | short tandem repeat | (GGGGGT) 3.5 | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv11395482 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 13,506,603 | 13,506,624 |
| nssv11408608 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 13,506,603 | 13,506,624 |
| nssv11395482 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 13,548,103 | 13,548,124 | ||
| nssv11408608 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 13,548,103 | 13,548,124 |