nsv2298701
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:6
- Validation:Not tested
- Clinical Assertions: No
- Region Size:80
- Description:MOTIF=[TTTCT],NS=[301],REF=[16.0],RL=[80],RPA=
[11.4,14.2,14.4,15.4,16.2],RU=[TTTCT],QUAL=[68273.6] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 160 SVs from 36 studies. See in: genome view
Overlapping variant regions from other studies: 160 SVs from 36 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv2298701 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 23,425,484 | 23,425,563 |
| nsv2298701 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000004.11 | Chr4 | 23,427,107 | 23,427,186 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv11450991 | short tandem repeat | (TTTCT) 16.2 | Sequencing | Genotyping |
| nssv11451089 | short tandem repeat | (TTTCT) 14.2 | Sequencing | Genotyping |
| nssv11451090 | short tandem repeat | (TTTCT) 11.4 | Sequencing | Genotyping |
| nssv11451516 | short tandem repeat | (TTTCT) 16 (ref) | Sequencing | Genotyping |
| nssv11452282 | short tandem repeat | (TTTCT) 14.4 | Sequencing | Genotyping |
| nssv11452283 | short tandem repeat | (TTTCT) 15.4 | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv11450991 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 23,425,484 | 23,425,563 |
| nssv11451089 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 23,425,484 | 23,425,563 |
| nssv11451090 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 23,425,484 | 23,425,563 |
| nssv11451516 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 23,425,484 | 23,425,563 |
| nssv11452282 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 23,425,484 | 23,425,563 |
| nssv11452283 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 23,425,484 | 23,425,563 |
| nssv11450991 | Submitted genomic | GRCh37 (hg19) | NC_000004.11 | Chr4 | 23,427,107 | 23,427,186 | ||
| nssv11451089 | Submitted genomic | GRCh37 (hg19) | NC_000004.11 | Chr4 | 23,427,107 | 23,427,186 | ||
| nssv11451090 | Submitted genomic | GRCh37 (hg19) | NC_000004.11 | Chr4 | 23,427,107 | 23,427,186 | ||
| nssv11451516 | Submitted genomic | GRCh37 (hg19) | NC_000004.11 | Chr4 | 23,427,107 | 23,427,186 | ||
| nssv11452282 | Submitted genomic | GRCh37 (hg19) | NC_000004.11 | Chr4 | 23,427,107 | 23,427,186 | ||
| nssv11452283 | Submitted genomic | GRCh37 (hg19) | NC_000004.11 | Chr4 | 23,427,107 | 23,427,186 |