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dbVar

Database of genomic structural variation

nsv2381685

Organism: Homo sapiens

Study:nstd128 (Mallick et al. 2016)
Variant Type:short tandem repeat
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:17

Description:MOTIF=[AATG],NS=[301],REF=[4.25],RL=[17],RU=[A
ATG],RPA=[],QUAL=[242082]
Publication(s):Mallick et al. 2016

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 79 SVs from 11 studies. See in: genome view

Remapped(Score: Perfect):150,299,489-150,299,505

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv2381685	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	150,299,489	150,299,505
nsv2381685	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	149,679,052	149,679,068

Variant Call Information

Variant Call ID	Type	Repeat Motif	Method	Analysis
nssv11914939	short tandem repeat	(AATG) 4.25 (ref)	Sequencing	Genotyping

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv11914939	Remapped	Perfect	GRCh38.p12	First Pass	NC_000005.10	Chr5	150,299,489	150,299,505
nssv11914939	Submitted genomic		GRCh37 (hg19)		NC_000005.9	Chr5	149,679,052	149,679,068

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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