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dbVar

Database of genomic structural variation

nsv3355567

Organism: Homo sapiens

Study:nstd162 (Audano et al. 2019)
Variant Type:mobile element insertion
Method Type:Sequencing
Submitted on:GRCh38 (hg38)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:1

Publication(s):Audano et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 182 SVs from 31 studies. See in: genome view

Submitted genomic86,278,967-86,278,967

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv3355567	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000016.10	Chr16	86,278,967	86,278,967
nsv3355567	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000016.9	Chr16	86,312,573	86,312,573

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14573086	herv insertion	SAMN04229552	Sequencing	de novo and local sequence assembly	24,632
nssv14573473	herv insertion	SAMN05181962	Sequencing	de novo and local sequence assembly	23,563
nssv14574964	herv insertion	SAMN05603729	Sequencing	de novo and local sequence assembly	24,108
nssv14586401	herv insertion	SAMN05603847	Sequencing	de novo and local sequence assembly	26,021

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv14573086	Submitted genomic		NC_000016.10:g.862 78967_86278968ins6 2	GRCh38 (hg38)		NC_000016.10	Chr16	86,278,967	86,278,967
nssv14573473	Submitted genomic		NC_000016.10:g.862 78967_86278968ins6 2	GRCh38 (hg38)		NC_000016.10	Chr16	86,278,967	86,278,967
nssv14574964	Submitted genomic		NC_000016.10:g.862 78967_86278968ins6 2	GRCh38 (hg38)		NC_000016.10	Chr16	86,278,967	86,278,967
nssv14586401	Submitted genomic		NC_000016.10:g.862 78967_86278968ins6 2	GRCh38 (hg38)		NC_000016.10	Chr16	86,278,967	86,278,967
nssv14573086	Remapped	Perfect	NC_000016.9:g.8631 2573_86312574ins62 NC_000016.9:g.8631 2573_86312574ins62	GRCh37.p13	First Pass	NC_000016.9	Chr16	86,312,573	86,312,573
nssv14573473	Remapped	Perfect	NC_000016.9:g.8631 2573_86312574ins62 NC_000016.9:g.8631 2573_86312574ins62	GRCh37.p13	First Pass	NC_000016.9	Chr16	86,312,573	86,312,573
nssv14574964	Remapped	Perfect	NC_000016.9:g.8631 2573_86312574ins62 NC_000016.9:g.8631 2573_86312574ins62	GRCh37.p13	First Pass	NC_000016.9	Chr16	86,312,573	86,312,573
nssv14586401	Remapped	Perfect	NC_000016.9:g.8631 2573_86312574ins62 NC_000016.9:g.8631 2573_86312574ins62	GRCh37.p13	First Pass	NC_000016.9	Chr16	86,312,573	86,312,573

Showing 8 of 12

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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