nsv3971574
- Organism: Homo sapiens
- Study:nstd168 (Levy-Sakin et al. 2019)
- Variant Type:translocation
- Method Type:Optical mapping
- Submitted on:GRCh38 (hg38)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Levy-Sakin et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 534 SVs from 57 studies. See in: genome view
Overlapping variant regions from other studies: 204 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 204 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 56 SVs from 24 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
|---|---|---|---|---|---|---|---|---|---|---|
| nsv3971574 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000001.11 | Chr1 | 148,179,993 | 148,179,993 | + | ||
| nsv3971574 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000016.10 | Chr16 | 70,830,479 | 70,830,479 | + | ||
| nsv3971574 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000016.9 | Chr16 | 70,864,382 | 70,864,382 | + |
| nsv3971574 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_003871055.3 | Chr1|NW_00 3871055.3 | 4,995,406 | 4,995,406 | + |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv15217132 | interchromosomal translocation | Optical mapping | Optical mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
|---|---|---|---|---|---|---|---|---|---|
| nssv15217132 | Submitted genomic | GRCh38 (hg38) | NC_000001.11 | Chr1 | 148,179,993 | 148,179,993 | + | ||
| nssv15217132 | Submitted genomic | GRCh38 (hg38) | NC_000016.10 | Chr16 | 70,830,479 | 70,830,479 | + | ||
| nssv15217132 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_003871055.3 | Chr1|NW_00 3871055.3 | 4,995,406 | 4,995,406 | + |
| nssv15217132 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 70,864,382 | 70,864,382 | + |