nsv437861
- Organism: Homo sapiens
- Study:nstd20 (McCarroll et al. 2006)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI34 (hg16)
- Variant Calls:8
- Validation:Not tested
- Clinical Assertions: No
- Region Size:76,672
- Publication(s):McCarroll et al. 2006
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 477 SVs from 68 studies. See in: genome view
Overlapping variant regions from other studies: 457 SVs from 66 studies. See in: genome view
Overlapping variant regions from other studies: 221 SVs from 35 studies. See in: genome view
Overlapping variant regions from other studies: 1 SVs from 1 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv437861 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 60,840,768 | 60,917,439 |
| nsv437861 | Remapped | Pass | GRCh37.p13 | Primary Assembly | Second Pass | NC_000003.11 | Chr3 | 60,830,770 | 60,903,111 |
| nsv437861 | Remapped | Pass | GRCh37.p13 | PATCHES | First Pass | NW_003871058.1 | Chr3|NW_00 3871058.1 | 272,500 | 344,841 |
| nsv437861 | Submitted genomic | NCBI34 (hg16) | Primary Assembly | NC_000003.8 | Chr3 | 60,783,767 | 60,860,449 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv471263 | copy number loss | NA11992 | SNP array | SNP genotyping analysis | 17 |
| nssv471264 | copy number loss | NA10860 | SNP array | SNP genotyping analysis | 19 |
| nssv471265 | copy number loss | NA11992 | SNP array | SNP genotyping analysis | 17 |
| nssv471266 | copy number loss | NA10860 | SNP array | SNP genotyping analysis | 19 |
| nssv471261 | copy number loss | NA11992 | SNP array | SNP genotyping analysis | 17 |
| nssv471262 | copy number loss | NA10835 | SNP array | SNP genotyping analysis | 28 |
| nssv471267 | copy number loss | NA11992 | SNP array | SNP genotyping analysis | 17 |
| nssv471269 | copy number loss | NA10860 | SNP array | SNP genotyping analysis | 19 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv471263 | Remapped | Good | NC_000003.12:g.(?_ 60840768)_(6091743 9_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 60,840,768 | 60,917,439 |
| nssv471264 | Remapped | Good | NC_000003.12:g.(?_ 60840768)_(6091743 9_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 60,840,768 | 60,917,439 |
| nssv471265 | Remapped | Perfect | NC_000003.12:g.(?_ 60863074)_(6090162 5_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 60,863,074 | 60,901,625 |
| nssv471266 | Remapped | Perfect | NC_000003.12:g.(?_ 60863074)_(6090162 5_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 60,863,074 | 60,901,625 |
| nssv471261 | Remapped | Perfect | NC_000003.12:g.(?_ 60873024)_(6089962 1_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 60,873,024 | 60,899,621 |
| nssv471262 | Remapped | Perfect | NC_000003.12:g.(?_ 60873024)_(6089962 1_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 60,873,024 | 60,899,621 |
| nssv471267 | Remapped | Perfect | NC_000003.12:g.(?_ 60890976)_(6089523 7_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 60,890,976 | 60,895,237 |
| nssv471269 | Remapped | Perfect | NC_000003.12:g.(?_ 60890976)_(6089523 7_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 60,890,976 | 60,895,237 |
| nssv471263 | Remapped | Pass | NW_003871058.1:g.( ?_272500)_(344841_ ?)del | GRCh37.p13 | First Pass | NW_003871058.1 | Chr3|NW_00 3871058.1 | 272,500 | 344,841 |
| nssv471264 | Remapped | Pass | NW_003871058.1:g.( ?_272500)_(344841_ ?)del | GRCh37.p13 | First Pass | NW_003871058.1 | Chr3|NW_00 3871058.1 | 272,500 | 344,841 |
| nssv471265 | Remapped | Perfect | NW_003871058.1:g.( ?_290476)_(329027_ ?)del | GRCh37.p13 | First Pass | NW_003871058.1 | Chr3|NW_00 3871058.1 | 290,476 | 329,027 |
| nssv471266 | Remapped | Perfect | NW_003871058.1:g.( ?_290476)_(329027_ ?)del | GRCh37.p13 | First Pass | NW_003871058.1 | Chr3|NW_00 3871058.1 | 290,476 | 329,027 |
| nssv471261 | Remapped | Perfect | NW_003871058.1:g.( ?_300426)_(327023_ ?)del | GRCh37.p13 | First Pass | NW_003871058.1 | Chr3|NW_00 3871058.1 | 300,426 | 327,023 |
| nssv471262 | Remapped | Perfect | NW_003871058.1:g.( ?_300426)_(327023_ ?)del | GRCh37.p13 | First Pass | NW_003871058.1 | Chr3|NW_00 3871058.1 | 300,426 | 327,023 |
| nssv471267 | Remapped | Perfect | NW_003871058.1:g.( ?_318378)_(322639_ ?)del | GRCh37.p13 | First Pass | NW_003871058.1 | Chr3|NW_00 3871058.1 | 318,378 | 322,639 |
| nssv471269 | Remapped | Perfect | NW_003871058.1:g.( ?_318378)_(322639_ ?)del | GRCh37.p13 | First Pass | NW_003871058.1 | Chr3|NW_00 3871058.1 | 318,378 | 322,639 |
| nssv471263 | Remapped | Pass | NC_000003.11:g.(?_ 60830770)_(6090311 1_?)del | GRCh37.p13 | Second Pass | NC_000003.11 | Chr3 | 60,830,770 | 60,903,111 |
| nssv471264 | Remapped | Pass | NC_000003.11:g.(?_ 60830770)_(6090311 1_?)del | GRCh37.p13 | Second Pass | NC_000003.11 | Chr3 | 60,830,770 | 60,903,111 |
| nssv471265 | Remapped | Perfect | NC_000003.11:g.(?_ 60848746)_(6088729 7_?)del | GRCh37.p13 | Second Pass | NC_000003.11 | Chr3 | 60,848,746 | 60,887,297 |
| nssv471266 | Remapped | Perfect | NC_000003.11:g.(?_ 60848746)_(6088729 7_?)del | GRCh37.p13 | Second Pass | NC_000003.11 | Chr3 | 60,848,746 | 60,887,297 |
| nssv471261 | Remapped | Perfect | NC_000003.11:g.(?_ 60858696)_(6088529 3_?)del | GRCh37.p13 | Second Pass | NC_000003.11 | Chr3 | 60,858,696 | 60,885,293 |
| nssv471262 | Remapped | Perfect | NC_000003.11:g.(?_ 60858696)_(6088529 3_?)del | GRCh37.p13 | Second Pass | NC_000003.11 | Chr3 | 60,858,696 | 60,885,293 |
| nssv471267 | Remapped | Perfect | NC_000003.11:g.(?_ 60876648)_(6088090 9_?)del | GRCh37.p13 | Second Pass | NC_000003.11 | Chr3 | 60,876,648 | 60,880,909 |
| nssv471269 | Remapped | Perfect | NC_000003.11:g.(?_ 60876648)_(6088090 9_?)del | GRCh37.p13 | Second Pass | NC_000003.11 | Chr3 | 60,876,648 | 60,880,909 |
| nssv471263 | Submitted genomic | NC_000003.8:g.(?_6 0783767)_(60860449 _?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 60,783,767 | 60,860,449 | ||
| nssv471264 | Submitted genomic | NC_000003.8:g.(?_6 0783767)_(60860449 _?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 60,783,767 | 60,860,449 | ||
| nssv471265 | Submitted genomic | NC_000003.8:g.(?_6 0806084)_(60844635 _?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 60,806,084 | 60,844,635 | ||
| nssv471266 | Submitted genomic | NC_000003.8:g.(?_6 0806084)_(60844635 _?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 60,806,084 | 60,844,635 | ||
| nssv471261 | Submitted genomic | NC_000003.8:g.(?_6 0816034)_(60842631 _?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 60,816,034 | 60,842,631 | ||
| nssv471262 | Submitted genomic | NC_000003.8:g.(?_6 0816034)_(60842631 _?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 60,816,034 | 60,842,631 | ||
| nssv471267 | Submitted genomic | NC_000003.8:g.(?_6 0833986)_(60838247 _?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 60,833,986 | 60,838,247 | ||
| nssv471269 | Submitted genomic | NC_000003.8:g.(?_6 0833986)_(60838247 _?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 60,833,986 | 60,838,247 |