nsv437903
- Organism: Homo sapiens
- Study:nstd20 (McCarroll et al. 2006)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI34 (hg16)
- Variant Calls:23
- Validation:Not tested
- Clinical Assertions: No
- Region Size:2,276
- Publication(s):McCarroll et al. 2006
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 451 SVs from 70 studies. See in: genome view
Overlapping variant regions from other studies: 451 SVs from 70 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv437903 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 190,019,565 | 190,021,840 |
| nsv437903 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 189,737,354 | 189,739,629 |
| nsv437903 | Submitted genomic | NCBI34 (hg16) | Primary Assembly | NC_000003.8 | Chr3 | 191,058,267 | 191,060,542 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv467894 | copy number loss | NA18858 | SNP array | SNP genotyping analysis | 13 |
| nssv467895 | copy number loss | NA18857 | SNP array | SNP genotyping analysis | 12 |
| nssv467896 | copy number loss | NA18914 | SNP array | SNP genotyping analysis | 26 |
| nssv467898 | copy number loss | NA18913 | SNP array | SNP genotyping analysis | 15 |
| nssv467899 | copy number loss | NA19205 | SNP array | SNP genotyping analysis | 27 |
| nssv467900 | copy number loss | NA19127 | SNP array | SNP genotyping analysis | 12 |
| nssv467901 | copy number loss | NA19132 | SNP array | SNP genotyping analysis | 24 |
| nssv467902 | copy number loss | NA19240 | SNP array | SNP genotyping analysis | 21 |
| nssv467903 | copy number loss | NA18524 | SNP array | SNP genotyping analysis | 10 |
| nssv467904 | copy number loss | NA18611 | SNP array | SNP genotyping analysis | 9 |
| nssv467905 | copy number loss | NA18537 | SNP array | SNP genotyping analysis | 11 |
| nssv467906 | copy number loss | NA18563 | SNP array | SNP genotyping analysis | 9 |
| nssv467907 | copy number loss | NA18624 | SNP array | SNP genotyping analysis | 9 |
| nssv467909 | copy number loss | NA18579 | SNP array | SNP genotyping analysis | 19 |
| nssv467910 | copy number loss | NA18633 | SNP array | SNP genotyping analysis | 11 |
| nssv467911 | copy number loss | NA18592 | SNP array | SNP genotyping analysis | 8 |
| nssv467912 | copy number loss | NA18620 | SNP array | SNP genotyping analysis | 14 |
| nssv467913 | copy number loss | NA18623 | SNP array | SNP genotyping analysis | 7 |
| nssv467914 | copy number loss | NA18953 | SNP array | SNP genotyping analysis | 12 |
| nssv467915 | copy number loss | NA18969 | SNP array | SNP genotyping analysis | 7 |
| nssv467916 | copy number loss | NA18991 | SNP array | SNP genotyping analysis | 11 |
| nssv467917 | copy number loss | NA19000 | SNP array | SNP genotyping analysis | 10 |
| nssv467918 | copy number loss | NA18976 | SNP array | SNP genotyping analysis | 16 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv467894 | Remapped | Perfect | NC_000003.12:g.(?_ 190019565)_(190021 840_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,565 | 190,021,840 |
| nssv467895 | Remapped | Perfect | NC_000003.12:g.(?_ 190019565)_(190021 840_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,565 | 190,021,840 |
| nssv467896 | Remapped | Perfect | NC_000003.12:g.(?_ 190019565)_(190021 840_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,565 | 190,021,840 |
| nssv467898 | Remapped | Perfect | NC_000003.12:g.(?_ 190019565)_(190021 840_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,565 | 190,021,840 |
| nssv467899 | Remapped | Perfect | NC_000003.12:g.(?_ 190019565)_(190021 840_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,565 | 190,021,840 |
| nssv467900 | Remapped | Perfect | NC_000003.12:g.(?_ 190019565)_(190021 840_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,565 | 190,021,840 |
| nssv467901 | Remapped | Perfect | NC_000003.12:g.(?_ 190019565)_(190021 840_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,565 | 190,021,840 |
| nssv467902 | Remapped | Perfect | NC_000003.12:g.(?_ 190019565)_(190021 840_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,565 | 190,021,840 |
| nssv467903 | Remapped | Perfect | NC_000003.12:g.(?_ 190019565)_(190021 840_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,565 | 190,021,840 |
| nssv467904 | Remapped | Perfect | NC_000003.12:g.(?_ 190019565)_(190021 840_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,565 | 190,021,840 |
| nssv467905 | Remapped | Perfect | NC_000003.12:g.(?_ 190019565)_(190021 840_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,565 | 190,021,840 |
| nssv467906 | Remapped | Perfect | NC_000003.12:g.(?_ 190019565)_(190021 840_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,565 | 190,021,840 |
| nssv467907 | Remapped | Perfect | NC_000003.12:g.(?_ 190019565)_(190021 840_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,565 | 190,021,840 |
| nssv467909 | Remapped | Perfect | NC_000003.12:g.(?_ 190019565)_(190021 840_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,565 | 190,021,840 |
| nssv467910 | Remapped | Perfect | NC_000003.12:g.(?_ 190019565)_(190021 840_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,565 | 190,021,840 |
| nssv467911 | Remapped | Perfect | NC_000003.12:g.(?_ 190019565)_(190021 840_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,565 | 190,021,840 |
| nssv467912 | Remapped | Perfect | NC_000003.12:g.(?_ 190019565)_(190021 840_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,565 | 190,021,840 |
| nssv467913 | Remapped | Perfect | NC_000003.12:g.(?_ 190019565)_(190021 840_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,565 | 190,021,840 |
| nssv467914 | Remapped | Perfect | NC_000003.12:g.(?_ 190019565)_(190021 840_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,565 | 190,021,840 |
| nssv467915 | Remapped | Perfect | NC_000003.12:g.(?_ 190019565)_(190021 840_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,565 | 190,021,840 |
| nssv467916 | Remapped | Perfect | NC_000003.12:g.(?_ 190019565)_(190021 840_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,565 | 190,021,840 |
| nssv467917 | Remapped | Perfect | NC_000003.12:g.(?_ 190019565)_(190021 840_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,565 | 190,021,840 |
| nssv467918 | Remapped | Perfect | NC_000003.12:g.(?_ 190019565)_(190021 840_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,565 | 190,021,840 |
| nssv467894 | Remapped | Perfect | NC_000003.11:g.(?_ 189737354)_(189739 629_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 189,737,354 | 189,739,629 |
| nssv467895 | Remapped | Perfect | NC_000003.11:g.(?_ 189737354)_(189739 629_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 189,737,354 | 189,739,629 |
| nssv467896 | Remapped | Perfect | NC_000003.11:g.(?_ 189737354)_(189739 629_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 189,737,354 | 189,739,629 |
| nssv467898 | Remapped | Perfect | NC_000003.11:g.(?_ 189737354)_(189739 629_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 189,737,354 | 189,739,629 |
| nssv467899 | Remapped | Perfect | NC_000003.11:g.(?_ 189737354)_(189739 629_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 189,737,354 | 189,739,629 |
| nssv467900 | Remapped | Perfect | NC_000003.11:g.(?_ 189737354)_(189739 629_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 189,737,354 | 189,739,629 |
| nssv467901 | Remapped | Perfect | NC_000003.11:g.(?_ 189737354)_(189739 629_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 189,737,354 | 189,739,629 |
| nssv467902 | Remapped | Perfect | NC_000003.11:g.(?_ 189737354)_(189739 629_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 189,737,354 | 189,739,629 |
| nssv467903 | Remapped | Perfect | NC_000003.11:g.(?_ 189737354)_(189739 629_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 189,737,354 | 189,739,629 |
| nssv467904 | Remapped | Perfect | NC_000003.11:g.(?_ 189737354)_(189739 629_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 189,737,354 | 189,739,629 |
| nssv467905 | Remapped | Perfect | NC_000003.11:g.(?_ 189737354)_(189739 629_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 189,737,354 | 189,739,629 |
| nssv467906 | Remapped | Perfect | NC_000003.11:g.(?_ 189737354)_(189739 629_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 189,737,354 | 189,739,629 |
| nssv467907 | Remapped | Perfect | NC_000003.11:g.(?_ 189737354)_(189739 629_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 189,737,354 | 189,739,629 |
| nssv467909 | Remapped | Perfect | NC_000003.11:g.(?_ 189737354)_(189739 629_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 189,737,354 | 189,739,629 |
| nssv467910 | Remapped | Perfect | NC_000003.11:g.(?_ 189737354)_(189739 629_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 189,737,354 | 189,739,629 |
| nssv467911 | Remapped | Perfect | NC_000003.11:g.(?_ 189737354)_(189739 629_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 189,737,354 | 189,739,629 |
| nssv467912 | Remapped | Perfect | NC_000003.11:g.(?_ 189737354)_(189739 629_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 189,737,354 | 189,739,629 |
| nssv467913 | Remapped | Perfect | NC_000003.11:g.(?_ 189737354)_(189739 629_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 189,737,354 | 189,739,629 |
| nssv467914 | Remapped | Perfect | NC_000003.11:g.(?_ 189737354)_(189739 629_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 189,737,354 | 189,739,629 |
| nssv467915 | Remapped | Perfect | NC_000003.11:g.(?_ 189737354)_(189739 629_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 189,737,354 | 189,739,629 |
| nssv467916 | Remapped | Perfect | NC_000003.11:g.(?_ 189737354)_(189739 629_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 189,737,354 | 189,739,629 |
| nssv467917 | Remapped | Perfect | NC_000003.11:g.(?_ 189737354)_(189739 629_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 189,737,354 | 189,739,629 |
| nssv467918 | Remapped | Perfect | NC_000003.11:g.(?_ 189737354)_(189739 629_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 189,737,354 | 189,739,629 |
| nssv467894 | Submitted genomic | NC_000003.8:g.(?_1 91058267)_(1910605 42_?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 191,058,267 | 191,060,542 | ||
| nssv467895 | Submitted genomic | NC_000003.8:g.(?_1 91058267)_(1910605 42_?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 191,058,267 | 191,060,542 | ||
| nssv467896 | Submitted genomic | NC_000003.8:g.(?_1 91058267)_(1910605 42_?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 191,058,267 | 191,060,542 | ||
| nssv467898 | Submitted genomic | NC_000003.8:g.(?_1 91058267)_(1910605 42_?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 191,058,267 | 191,060,542 | ||
| nssv467899 | Submitted genomic | NC_000003.8:g.(?_1 91058267)_(1910605 42_?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 191,058,267 | 191,060,542 | ||
| nssv467900 | Submitted genomic | NC_000003.8:g.(?_1 91058267)_(1910605 42_?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 191,058,267 | 191,060,542 | ||
| nssv467901 | Submitted genomic | NC_000003.8:g.(?_1 91058267)_(1910605 42_?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 191,058,267 | 191,060,542 | ||
| nssv467902 | Submitted genomic | NC_000003.8:g.(?_1 91058267)_(1910605 42_?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 191,058,267 | 191,060,542 | ||
| nssv467903 | Submitted genomic | NC_000003.8:g.(?_1 91058267)_(1910605 42_?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 191,058,267 | 191,060,542 | ||
| nssv467904 | Submitted genomic | NC_000003.8:g.(?_1 91058267)_(1910605 42_?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 191,058,267 | 191,060,542 | ||
| nssv467905 | Submitted genomic | NC_000003.8:g.(?_1 91058267)_(1910605 42_?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 191,058,267 | 191,060,542 | ||
| nssv467906 | Submitted genomic | NC_000003.8:g.(?_1 91058267)_(1910605 42_?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 191,058,267 | 191,060,542 | ||
| nssv467907 | Submitted genomic | NC_000003.8:g.(?_1 91058267)_(1910605 42_?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 191,058,267 | 191,060,542 | ||
| nssv467909 | Submitted genomic | NC_000003.8:g.(?_1 91058267)_(1910605 42_?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 191,058,267 | 191,060,542 | ||
| nssv467910 | Submitted genomic | NC_000003.8:g.(?_1 91058267)_(1910605 42_?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 191,058,267 | 191,060,542 | ||
| nssv467911 | Submitted genomic | NC_000003.8:g.(?_1 91058267)_(1910605 42_?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 191,058,267 | 191,060,542 | ||
| nssv467912 | Submitted genomic | NC_000003.8:g.(?_1 91058267)_(1910605 42_?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 191,058,267 | 191,060,542 | ||
| nssv467913 | Submitted genomic | NC_000003.8:g.(?_1 91058267)_(1910605 42_?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 191,058,267 | 191,060,542 | ||
| nssv467914 | Submitted genomic | NC_000003.8:g.(?_1 91058267)_(1910605 42_?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 191,058,267 | 191,060,542 | ||
| nssv467915 | Submitted genomic | NC_000003.8:g.(?_1 91058267)_(1910605 42_?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 191,058,267 | 191,060,542 | ||
| nssv467916 | Submitted genomic | NC_000003.8:g.(?_1 91058267)_(1910605 42_?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 191,058,267 | 191,060,542 | ||
| nssv467917 | Submitted genomic | NC_000003.8:g.(?_1 91058267)_(1910605 42_?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 191,058,267 | 191,060,542 | ||
| nssv467918 | Submitted genomic | NC_000003.8:g.(?_1 91058267)_(1910605 42_?)del | NCBI34 (hg16) | NC_000003.8 | Chr3 | 191,058,267 | 191,060,542 |