Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv437908

Organism: Homo sapiens

Study:nstd20 (McCarroll et al. 2006)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI34 (hg16)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:2,230

Publication(s):McCarroll et al. 2006

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 306 SVs from 55 studies. See in: genome view

Remapped(Score: Perfect):193,418,687-193,420,916

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv437908	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	193,418,687	193,420,916
nsv437908	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000003.11	Chr3	193,136,476	193,138,705
nsv437908	Submitted genomic		NCBI34 (hg16)	Primary Assembly		NC_000003.8	Chr3	194,457,389	194,459,618

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv468090	copy number loss	NA18637	SNP array	SNP genotyping analysis	13
nssv468091	copy number loss	NA18944	SNP array	SNP genotyping analysis	15
nssv468092	copy number loss	NA18945	SNP array	SNP genotyping analysis	17
nssv468093	copy number loss	NA18992	SNP array	SNP genotyping analysis	15
nssv468094	copy number loss	NA19000	SNP array	SNP genotyping analysis	10
nssv468095	copy number loss	NA18987	SNP array	SNP genotyping analysis	14

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv468090	Remapped	Perfect	NC_000003.12:g.(?_ 193418687)_(193420 916_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	193,418,687	193,420,916
nssv468091	Remapped	Perfect	NC_000003.12:g.(?_ 193418687)_(193420 916_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	193,418,687	193,420,916
nssv468092	Remapped	Perfect	NC_000003.12:g.(?_ 193418687)_(193420 916_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	193,418,687	193,420,916
nssv468093	Remapped	Perfect	NC_000003.12:g.(?_ 193418687)_(193420 916_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	193,418,687	193,420,916
nssv468094	Remapped	Perfect	NC_000003.12:g.(?_ 193418687)_(193420 916_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	193,418,687	193,420,916
nssv468095	Remapped	Perfect	NC_000003.12:g.(?_ 193418687)_(193420 916_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	193,418,687	193,420,916
nssv468090	Remapped	Perfect	NC_000003.11:g.(?_ 193136476)_(193138 705_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	193,136,476	193,138,705
nssv468091	Remapped	Perfect	NC_000003.11:g.(?_ 193136476)_(193138 705_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	193,136,476	193,138,705
nssv468092	Remapped	Perfect	NC_000003.11:g.(?_ 193136476)_(193138 705_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	193,136,476	193,138,705
nssv468093	Remapped	Perfect	NC_000003.11:g.(?_ 193136476)_(193138 705_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	193,136,476	193,138,705
nssv468094	Remapped	Perfect	NC_000003.11:g.(?_ 193136476)_(193138 705_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	193,136,476	193,138,705
nssv468095	Remapped	Perfect	NC_000003.11:g.(?_ 193136476)_(193138 705_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	193,136,476	193,138,705
nssv468090	Submitted genomic		NC_000003.8:g.(?_1 94457389)_(1944596 18_?)del	NCBI34 (hg16)		NC_000003.8	Chr3	194,457,389	194,459,618
nssv468091	Submitted genomic		NC_000003.8:g.(?_1 94457389)_(1944596 18_?)del	NCBI34 (hg16)		NC_000003.8	Chr3	194,457,389	194,459,618
nssv468092	Submitted genomic		NC_000003.8:g.(?_1 94457389)_(1944596 18_?)del	NCBI34 (hg16)		NC_000003.8	Chr3	194,457,389	194,459,618
nssv468093	Submitted genomic		NC_000003.8:g.(?_1 94457389)_(1944596 18_?)del	NCBI34 (hg16)		NC_000003.8	Chr3	194,457,389	194,459,618
nssv468094	Submitted genomic		NC_000003.8:g.(?_1 94457389)_(1944596 18_?)del	NCBI34 (hg16)		NC_000003.8	Chr3	194,457,389	194,459,618
nssv468095	Submitted genomic		NC_000003.8:g.(?_1 94457389)_(1944596 18_?)del	NCBI34 (hg16)		NC_000003.8	Chr3	194,457,389	194,459,618

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI