nsv438042
- Organism: Homo sapiens
- Study:nstd20 (McCarroll et al. 2006)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI34 (hg16)
- Variant Calls:6
- Validation:Not tested
- Clinical Assertions: No
- Region Size:47,956
- Publication(s):McCarroll et al. 2006
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 432 SVs from 52 studies. See in: genome view
Overlapping variant regions from other studies: 432 SVs from 52 studies. See in: genome view
Overlapping variant regions from other studies: 1 SVs from 1 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv438042 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000008.11 | Chr8 | 15,755,094 | 15,803,049 |
| nsv438042 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000008.10 | Chr8 | 15,612,603 | 15,660,558 |
| nsv438042 | Submitted genomic | NCBI34 (hg16) | Primary Assembly | NC_000008.8 | Chr8 | 15,622,969 | 15,670,924 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv469726 | copy number loss | NA12234 | SNP array | SNP genotyping analysis | 21 |
| nssv469727 | copy number loss | NA10863 | SNP array | SNP genotyping analysis | 24 |
| nssv469728 | copy number loss | NA12234 | SNP array | SNP genotyping analysis | 21 |
| nssv469730 | copy number loss | NA10863 | SNP array | SNP genotyping analysis | 24 |
| nssv469724 | copy number loss | NA12234 | SNP array | SNP genotyping analysis | 21 |
| nssv469725 | copy number loss | NA10863 | SNP array | SNP genotyping analysis | 24 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv469726 | Remapped | Perfect | NC_000008.11:g.(?_ 15755094)_(1580304 9_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,755,094 | 15,803,049 |
| nssv469727 | Remapped | Perfect | NC_000008.11:g.(?_ 15755094)_(1580304 9_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,755,094 | 15,803,049 |
| nssv469728 | Remapped | Perfect | NC_000008.11:g.(?_ 15759297)_(1576501 0_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,759,297 | 15,765,010 |
| nssv469730 | Remapped | Perfect | NC_000008.11:g.(?_ 15759297)_(1576501 0_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,759,297 | 15,765,010 |
| nssv469724 | Remapped | Perfect | NC_000008.11:g.(?_ 15775888)_(1577825 3_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,775,888 | 15,778,253 |
| nssv469725 | Remapped | Perfect | NC_000008.11:g.(?_ 15775888)_(1577825 3_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,775,888 | 15,778,253 |
| nssv469726 | Remapped | Perfect | NC_000008.10:g.(?_ 15612603)_(1566055 8_?)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 15,612,603 | 15,660,558 |
| nssv469727 | Remapped | Perfect | NC_000008.10:g.(?_ 15612603)_(1566055 8_?)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 15,612,603 | 15,660,558 |
| nssv469728 | Remapped | Perfect | NC_000008.10:g.(?_ 15616806)_(1562251 9_?)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 15,616,806 | 15,622,519 |
| nssv469730 | Remapped | Perfect | NC_000008.10:g.(?_ 15616806)_(1562251 9_?)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 15,616,806 | 15,622,519 |
| nssv469724 | Remapped | Perfect | NC_000008.10:g.(?_ 15633397)_(1563576 2_?)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 15,633,397 | 15,635,762 |
| nssv469725 | Remapped | Perfect | NC_000008.10:g.(?_ 15633397)_(1563576 2_?)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 15,633,397 | 15,635,762 |
| nssv469726 | Submitted genomic | NC_000008.8:g.(?_1 5622969)_(15670924 _?)del | NCBI34 (hg16) | NC_000008.8 | Chr8 | 15,622,969 | 15,670,924 | ||
| nssv469727 | Submitted genomic | NC_000008.8:g.(?_1 5622969)_(15670924 _?)del | NCBI34 (hg16) | NC_000008.8 | Chr8 | 15,622,969 | 15,670,924 | ||
| nssv469728 | Submitted genomic | NC_000008.8:g.(?_1 5627172)_(15632885 _?)del | NCBI34 (hg16) | NC_000008.8 | Chr8 | 15,627,172 | 15,632,885 | ||
| nssv469730 | Submitted genomic | NC_000008.8:g.(?_1 5627172)_(15632885 _?)del | NCBI34 (hg16) | NC_000008.8 | Chr8 | 15,627,172 | 15,632,885 | ||
| nssv469724 | Submitted genomic | NC_000008.8:g.(?_1 5643763)_(15646128 _?)del | NCBI34 (hg16) | NC_000008.8 | Chr8 | 15,643,763 | 15,646,128 | ||
| nssv469725 | Submitted genomic | NC_000008.8:g.(?_1 5643763)_(15646128 _?)del | NCBI34 (hg16) | NC_000008.8 | Chr8 | 15,643,763 | 15,646,128 |