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dbVar

Database of genomic structural variation

nsv438092

Organism: Homo sapiens

Study:nstd20 (McCarroll et al. 2006)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI34 (hg16)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:35,773

Publication(s):McCarroll et al. 2006

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 545 SVs from 57 studies. See in: genome view

Remapped(Score: Perfect):10,546,814-10,582,586

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv438092	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000009.12	Chr9	10,546,814	10,582,586
nsv438092	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000009.11	Chr9	10,546,814	10,582,586
nsv438092	Submitted genomic		NCBI34 (hg16)	Primary Assembly		GPC_000000201.1	Chr9	10,536,814	10,572,586

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv470066	copy number loss	NA12760	SNP array	SNP genotyping analysis	19
nssv470067	copy number loss	NA12752	SNP array	SNP genotyping analysis	20

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv470066	Remapped	Perfect	NC_000009.12:g.(?_ 10546814)_(1058258 6_?)del	GRCh38.p12	First Pass	NC_000009.12	Chr9	10,546,814	10,582,586
nssv470067	Remapped	Perfect	NC_000009.12:g.(?_ 10546814)_(1058258 6_?)del	GRCh38.p12	First Pass	NC_000009.12	Chr9	10,546,814	10,582,586
nssv470066	Remapped	Perfect	NC_000009.11:g.(?_ 10546814)_(1058258 6_?)del	GRCh37.p13	First Pass	NC_000009.11	Chr9	10,546,814	10,582,586
nssv470067	Remapped	Perfect	NC_000009.11:g.(?_ 10546814)_(1058258 6_?)del	GRCh37.p13	First Pass	NC_000009.11	Chr9	10,546,814	10,582,586
nssv470066	Submitted genomic		GPC_000000201.1:g. (?_10536814)_(1057 2586_?)del	NCBI34 (hg16)		GPC_000000201.1	Chr9	10,536,814	10,572,586
nssv470067	Submitted genomic		GPC_000000201.1:g. (?_10536814)_(1057 2586_?)del	NCBI34 (hg16)		GPC_000000201.1	Chr9	10,536,814	10,572,586

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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