nsv438397

Organism: Homo sapiens

Study:nstd20 (McCarroll et al. 2006)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI34 (hg16)

Variant Calls:9
Validation:Not tested
Clinical Assertions: No
Region Size:48,853

Publication(s):McCarroll et al. 2006

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 512 SVs from 74 studies. See in: genome view

Remapped(Score: Perfect):46,756,350-46,805,202

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv438397	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	46,756,350	46,805,202
nsv438397	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000003.11	Chr3	46,797,840	46,846,692
nsv438397	Submitted genomic		NCBI34 (hg16)	Primary Assembly		NC_000003.8	Chr3	46,758,432	46,807,284

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv471249	copy number loss	NA18501	SNP array	SNP genotyping analysis	19
nssv471250	copy number loss	NA18500	SNP array	SNP genotyping analysis	35
nssv471251	copy number loss	NA18505	SNP array	SNP genotyping analysis	23
nssv471252	copy number loss	NA18503	SNP array	SNP genotyping analysis	30
nssv471253	copy number loss	NA18859	SNP array	SNP genotyping analysis	10
nssv471254	copy number loss	NA18860	SNP array	SNP genotyping analysis	18
nssv471255	copy number loss	NA19152	SNP array	SNP genotyping analysis	9
nssv471256	copy number loss	NA19154	SNP array	SNP genotyping analysis	13
nssv471258	copy number loss		SNP array	SNP genotyping analysis

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv471249	Remapped	Perfect	NC_000003.12:g.(?_ 46756350)_(4680520 2_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	46,756,350	46,805,202
nssv471250	Remapped	Perfect	NC_000003.12:g.(?_ 46756350)_(4680520 2_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	46,756,350	46,805,202
nssv471251	Remapped	Perfect	NC_000003.12:g.(?_ 46756350)_(4680520 2_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	46,756,350	46,805,202
nssv471252	Remapped	Perfect	NC_000003.12:g.(?_ 46756350)_(4680520 2_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	46,756,350	46,805,202
nssv471253	Remapped	Perfect	NC_000003.12:g.(?_ 46756350)_(4680520 2_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	46,756,350	46,805,202
nssv471254	Remapped	Perfect	NC_000003.12:g.(?_ 46756350)_(4680520 2_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	46,756,350	46,805,202
nssv471255	Remapped	Perfect	NC_000003.12:g.(?_ 46756350)_(4680520 2_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	46,756,350	46,805,202
nssv471256	Remapped	Perfect	NC_000003.12:g.(?_ 46756350)_(4680520 2_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	46,756,350	46,805,202
nssv471258	Remapped	Perfect	NC_000003.12:g.(?_ 46756350)_(4680520 2_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	46,756,350	46,805,202
nssv471249	Remapped	Perfect	NC_000003.11:g.(?_ 46797840)_(4684669 2_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	46,797,840	46,846,692
nssv471250	Remapped	Perfect	NC_000003.11:g.(?_ 46797840)_(4684669 2_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	46,797,840	46,846,692
nssv471251	Remapped	Perfect	NC_000003.11:g.(?_ 46797840)_(4684669 2_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	46,797,840	46,846,692
nssv471252	Remapped	Perfect	NC_000003.11:g.(?_ 46797840)_(4684669 2_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	46,797,840	46,846,692
nssv471253	Remapped	Perfect	NC_000003.11:g.(?_ 46797840)_(4684669 2_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	46,797,840	46,846,692
nssv471254	Remapped	Perfect	NC_000003.11:g.(?_ 46797840)_(4684669 2_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	46,797,840	46,846,692
nssv471255	Remapped	Perfect	NC_000003.11:g.(?_ 46797840)_(4684669 2_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	46,797,840	46,846,692
nssv471256	Remapped	Perfect	NC_000003.11:g.(?_ 46797840)_(4684669 2_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	46,797,840	46,846,692
nssv471258	Remapped	Perfect	NC_000003.11:g.(?_ 46797840)_(4684669 2_?)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	46,797,840	46,846,692
nssv471249	Submitted genomic		NC_000003.8:g.(?_4 6758432)_(46807284 _?)del	NCBI34 (hg16)		NC_000003.8	Chr3	46,758,432	46,807,284
nssv471250	Submitted genomic		NC_000003.8:g.(?_4 6758432)_(46807284 _?)del	NCBI34 (hg16)		NC_000003.8	Chr3	46,758,432	46,807,284
nssv471251	Submitted genomic		NC_000003.8:g.(?_4 6758432)_(46807284 _?)del	NCBI34 (hg16)		NC_000003.8	Chr3	46,758,432	46,807,284
nssv471252	Submitted genomic		NC_000003.8:g.(?_4 6758432)_(46807284 _?)del	NCBI34 (hg16)		NC_000003.8	Chr3	46,758,432	46,807,284
nssv471253	Submitted genomic		NC_000003.8:g.(?_4 6758432)_(46807284 _?)del	NCBI34 (hg16)		NC_000003.8	Chr3	46,758,432	46,807,284
nssv471254	Submitted genomic		NC_000003.8:g.(?_4 6758432)_(46807284 _?)del	NCBI34 (hg16)		NC_000003.8	Chr3	46,758,432	46,807,284
nssv471255	Submitted genomic		NC_000003.8:g.(?_4 6758432)_(46807284 _?)del	NCBI34 (hg16)		NC_000003.8	Chr3	46,758,432	46,807,284
nssv471256	Submitted genomic		NC_000003.8:g.(?_4 6758432)_(46807284 _?)del	NCBI34 (hg16)		NC_000003.8	Chr3	46,758,432	46,807,284
nssv471258	Submitted genomic		NC_000003.8:g.(?_4 6758432)_(46807284 _?)del	NCBI34 (hg16)		NC_000003.8	Chr3	46,758,432	46,807,284

dbVar

Database of genomic structural variation

nsv438397

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant