nsv4590690
- Organism: Homo sapiens
- Study:nstd183 (DECIPHER Consensus CNVs)
- Variant Type:copy number variation
- Method Type:Curated
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:4,141
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 163 SVs from 29 studies. See in: genome view
Overlapping variant regions from other studies: 62 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 163 SVs from 29 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4590690 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 179,791,856 | 179,795,996 |
| nsv4590690 | Remapped | Perfect | GRCh38.p12 | PATCHES | Second Pass | NW_016107298.1 | Chr5|NW_01 6107298.1 | 557,433 | 561,573 |
| nsv4590690 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000005.9 | Chr5 | 179,218,857 | 179,222,997 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16119869 | duplication | Curated | Curated |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16119869 | Remapped | Perfect | NW_016107298.1:g.( ?_557433)_(561573_ ?)dup | GRCh38.p12 | Second Pass | NW_016107298.1 | Chr5|NW_01 6107298.1 | 557,433 | 561,573 |
| nssv16119869 | Remapped | Perfect | NC_000005.10:g.(?_ 179791856)_(179795 996_?)dup | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 179,791,856 | 179,795,996 |
| nssv16119869 | Submitted genomic | NC_000005.9:g.(?_1 79218857)_(1792229 97_?)dup | GRCh37 (hg19) | NC_000005.9 | Chr5 | 179,218,857 | 179,222,997 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv16119869 | 0.001 | 1 | 845 |