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dbVar

Database of genomic structural variation

nsv4643852

Organism: Homo sapiens

Study:nstd186 (NCBI Curated Common Structural Variants)
Variant Type:mobile element deletion
Method Type:Curated
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:352

Description:esv3876934 from 1000 Genomes Consortium Phase 3 Integrated SV. For a full list of variants now included in nstd186, refer to the mapping file provided here.

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 116 SVs from 49 studies. See in: genome view

Remapped(Score: Perfect):19,219,108-19,219,459

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv4643852	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	19,219,108	19,219,459
nsv4643852	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000016.9	Chr16	19,230,430	19,230,781

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv16185142	alu deletion	Curated	Curated

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv16185142	Remapped	Perfect	NC_000016.10:g.192 19108_19219459del	GRCh38.p12	First Pass	NC_000016.10	Chr16	19,219,108	19,219,459
nssv16185142	Submitted genomic		NC_000016.9:g.1923 0430_19230781del	GRCh37 (hg19)		NC_000016.9	Chr16	19,230,430	19,230,781

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv16185142	0.694	3476	5008

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