nsv511106
- Organism: Homo sapiens
- Study:nstd49 (Teague et al. 2010)
- Variant Type:inversion
- Method Type:Optical mapping
- Submitted on:NCBI35 (hg17)
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:611,479
- Publication(s):Teague et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1982 SVs from 79 studies. See in: genome view
Overlapping variant regions from other studies: 455 SVs from 54 studies. See in: genome view
Overlapping variant regions from other studies: 200 SVs from 31 studies. See in: genome view
Overlapping variant regions from other studies: 1986 SVs from 79 studies. See in: genome view
Overlapping variant regions from other studies: 31 SVs from 10 studies. See in: genome view
Overlapping variant regions from other studies: 29 SVs from 9 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv511106 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 70,384,945 | - | - | 70,996,423 |
| nsv511106 | Remapped | Pass | GRCh38.p12 | ALT_REF_LOCI_2 | Second Pass | NT_187651.1 | Chr5|NT_18 7651.1 | - | 443,822 | 764,304 | - |
| nsv511106 | Remapped | Pass | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NW_003315917.2 | Chr5|NW_00 3315917.2 | 414,407 | - | 800,613 | - |
| nsv511106 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 69,680,772 | - | - | 70,292,250 |
| nsv511106 | Remapped | Pass | GRCh37.p13 | PATCHES | Second Pass | NW_003315917.2 | Chr5|NW_00 3315917.2 | 414,407 | - | 810,364 | - |
| nsv511106 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000005.8 | Chr5 | 69,716,528 | - | - | 70,328,006 |
Variant Call Information
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|
| nssv624297 | Remapped | Pass | NW_003315917.2:g.( 414407_?)_(800613_ ?)inv | GRCh38.p12 | Second Pass | NW_003315917.2 | Chr5|NW_00 3315917.2 | 414,407 | 800,613 | - |
| nssv622370 | Remapped | Perfect | NC_000005.10:g.(70 384945_?)_(?_70646 072)inv | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 70,384,945 | - | 70,646,072 |
| nssv624297 | Remapped | Perfect | NC_000005.10:g.(70 533921_?)_(?_70996 423)inv | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 70,533,921 | - | 70,996,423 |
| nssv624297 | Remapped | Pass | NW_003315917.2:g.( 414407_?)_(810364_ ?)inv | GRCh37.p13 | Second Pass | NW_003315917.2 | Chr5|NW_00 3315917.2 | 414,407 | 810,364 | - |
| nssv622370 | Remapped | Perfect | NC_000005.9:g.(696 80772_?)_(?_699418 99)inv | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 69,680,772 | - | 69,941,899 |
| nssv624297 | Remapped | Perfect | NC_000005.9:g.(698 29748_?)_(?_702922 50)inv | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 69,829,748 | - | 70,292,250 |
| nssv622370 | Submitted genomic | NC_000005.8:g.(697 16528_?)_(?_699776 55)inv | NCBI35 (hg17) | NC_000005.8 | Chr5 | 69,716,528 | - | 69,977,655 | ||
| nssv624297 | Submitted genomic | NC_000005.8:g.(698 65504_?)_(?_703280 06)inv | NCBI35 (hg17) | NC_000005.8 | Chr5 | 69,865,504 | - | 70,328,006 |