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dbVar

Database of genomic structural variation

nsv6621006

Organism: Homo sapiens

Study:nstd224 (Zarrei et al. 2023)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:17,444

Publication(s):Zarrei et al. 2023

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 275 SVs from 66 studies. See in: genome view

Remapped(Score: Perfect):5,884,409-5,901,852

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv6621006	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	5,884,409	5,901,852
nsv6621006	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000011.9	Chr11	5,905,639	5,923,082

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv18299602	duplication	OSC5217	SNP array	Probe signal intensity	nssv18299019, nssv18299020, nssv18299601
nssv18299604	duplication	OSC5219	SNP array	Probe signal intensity	5
nssv18300707	duplication	OSC5623	SNP array	Probe signal intensity	nssv18300708, nssv18300709, nssv18301984

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv18299602	Remapped	Perfect	NC_000011.10:g.(?_ 5884409)_(5901852_ ?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	5,884,409	5,901,852
nssv18299604	Remapped	Perfect	NC_000011.10:g.(?_ 5884409)_(5901852_ ?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	5,884,409	5,901,852
nssv18300707	Remapped	Perfect	NC_000011.10:g.(?_ 5884409)_(5901852_ ?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	5,884,409	5,901,852
nssv18299602	Submitted genomic		NC_000011.9:g.(?_5 905639)_(5923082_? )dup	GRCh37 (hg19)		NC_000011.9	Chr11	5,905,639	5,923,082
nssv18299604	Submitted genomic		NC_000011.9:g.(?_5 905639)_(5923082_? )dup	GRCh37 (hg19)		NC_000011.9	Chr11	5,905,639	5,923,082
nssv18300707	Submitted genomic		NC_000011.9:g.(?_5 905639)_(5923082_? )dup	GRCh37 (hg19)		NC_000011.9	Chr11	5,905,639	5,923,082

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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