nsv6622831
- Organism: Homo sapiens
- Study:nstd224 (Zarrei et al. 2023)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37
- Variant Calls:23
- Validation:Not tested
- Clinical Assertions: No
- Region Size:99,144
- Publication(s):Zarrei et al. 2023
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 4027 SVs from 94 studies. See in: genome view
Overlapping variant regions from other studies: 4145 SVs from 97 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv6622831 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 22,081,409 | 22,180,552 |
| nsv6622831 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000015.9 | Chr15 | 22,369,360 | 22,468,503 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv18282902 | deletion | OSC2296 | SNP array | Probe signal intensity | 5 |
| nssv18283516 | deletion | OSC2285 | SNP array | Probe signal intensity | nssv18283179, nssv18283517 |
| nssv18283945 | deletion | OSC2375 | SNP array | Probe signal intensity | nssv18283651, nssv18283944, nssv18283946 |
| nssv18283988 | deletion | OSC2405 | SNP array | Probe signal intensity | 7 |
| nssv18286594 | duplication | OSC0303 | SNP array | Probe signal intensity | 8 |
| nssv18292829 | deletion | OSC4069 | SNP array | Probe signal intensity | 7 |
| nssv18293043 | deletion | OSC4063 | SNP array | Probe signal intensity | 6 |
| nssv18293259 | deletion | OSC4208 | SNP array | Probe signal intensity | 10 |
| nssv18293733 | duplication | OSC4068 | SNP array | Probe signal intensity | nssv18292828, nssv18293410, nssv18293734 |
| nssv18293757 | deletion | OSC4080 | SNP array | Probe signal intensity | nssv18293758 |
| nssv18293821 | deletion | OSC4120 | SNP array | Probe signal intensity | 7 |
| nssv18293904 | deletion | OSC4195 | SNP array | Probe signal intensity | nssv18293905, nssv18293906, nssv18293009 |
| nssv18294213 | deletion | OSC4400 | SNP array | Probe signal intensity | 7 |
| nssv18294495 | deletion | OSC4436 | SNP array | Probe signal intensity | 8 |
| nssv18294548 | deletion | OSC4471 | SNP array | Probe signal intensity | 8 |
| nssv18295795 | deletion | OSC4477 | SNP array | Probe signal intensity | 5 |
| nssv18295868 | deletion | OSC4528 | SNP array | Probe signal intensity | nssv18295869 |
| nssv18298621 | deletion | OSC4950 | SNP array | Probe signal intensity | 5 |
| nssv18299401 | duplication | OSC5326 | SNP array | Probe signal intensity | nssv18299400, nssv18299742 |
| nssv18299737 | duplication | OSC5321 | SNP array | Probe signal intensity | nssv18299143, nssv18299388 |
| nssv18300718 | deletion | OSC5378 | SNP array | Probe signal intensity | 5 |
| nssv18301728 | duplication | OSC0586 | SNP array | Probe signal intensity | nssv18302372, nssv18302368 |
| nssv18316060 | deletion | OSC0856 | SNP array | Probe signal intensity | 8 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv18282902 | Remapped | Perfect | NC_000015.10:g.(?_ 22081409)_(2218055 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,081,409 | 22,180,552 |
| nssv18283516 | Remapped | Perfect | NC_000015.10:g.(?_ 22081409)_(2218055 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,081,409 | 22,180,552 |
| nssv18283945 | Remapped | Perfect | NC_000015.10:g.(?_ 22081409)_(2218055 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,081,409 | 22,180,552 |
| nssv18283988 | Remapped | Perfect | NC_000015.10:g.(?_ 22081409)_(2218055 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,081,409 | 22,180,552 |
| nssv18286594 | Remapped | Perfect | NC_000015.10:g.(?_ 22081409)_(2218055 2_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,081,409 | 22,180,552 |
| nssv18292829 | Remapped | Perfect | NC_000015.10:g.(?_ 22081409)_(2218055 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,081,409 | 22,180,552 |
| nssv18293043 | Remapped | Perfect | NC_000015.10:g.(?_ 22081409)_(2218055 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,081,409 | 22,180,552 |
| nssv18293259 | Remapped | Perfect | NC_000015.10:g.(?_ 22081409)_(2218055 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,081,409 | 22,180,552 |
| nssv18293733 | Remapped | Perfect | NC_000015.10:g.(?_ 22081409)_(2218055 2_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,081,409 | 22,180,552 |
| nssv18293757 | Remapped | Perfect | NC_000015.10:g.(?_ 22081409)_(2218055 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,081,409 | 22,180,552 |
| nssv18293821 | Remapped | Perfect | NC_000015.10:g.(?_ 22081409)_(2218055 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,081,409 | 22,180,552 |
| nssv18293904 | Remapped | Perfect | NC_000015.10:g.(?_ 22081409)_(2218055 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,081,409 | 22,180,552 |
| nssv18294213 | Remapped | Perfect | NC_000015.10:g.(?_ 22081409)_(2218055 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,081,409 | 22,180,552 |
| nssv18294495 | Remapped | Perfect | NC_000015.10:g.(?_ 22081409)_(2218055 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,081,409 | 22,180,552 |
| nssv18294548 | Remapped | Perfect | NC_000015.10:g.(?_ 22081409)_(2218055 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,081,409 | 22,180,552 |
| nssv18295795 | Remapped | Perfect | NC_000015.10:g.(?_ 22081409)_(2218055 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,081,409 | 22,180,552 |
| nssv18295868 | Remapped | Perfect | NC_000015.10:g.(?_ 22081409)_(2218055 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,081,409 | 22,180,552 |
| nssv18298621 | Remapped | Perfect | NC_000015.10:g.(?_ 22081409)_(2218055 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,081,409 | 22,180,552 |
| nssv18299401 | Remapped | Perfect | NC_000015.10:g.(?_ 22081409)_(2218055 2_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,081,409 | 22,180,552 |
| nssv18299737 | Remapped | Perfect | NC_000015.10:g.(?_ 22081409)_(2218055 2_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,081,409 | 22,180,552 |
| nssv18300718 | Remapped | Perfect | NC_000015.10:g.(?_ 22081409)_(2218055 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,081,409 | 22,180,552 |
| nssv18301728 | Remapped | Perfect | NC_000015.10:g.(?_ 22081409)_(2218055 2_?)dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,081,409 | 22,180,552 |
| nssv18316060 | Remapped | Perfect | NC_000015.10:g.(?_ 22081409)_(2218055 2_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,081,409 | 22,180,552 |
| nssv18282902 | Submitted genomic | NC_000015.9:g.(?_2 2369360)_(22468503 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,369,360 | 22,468,503 | ||
| nssv18283516 | Submitted genomic | NC_000015.9:g.(?_2 2369360)_(22468503 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,369,360 | 22,468,503 | ||
| nssv18283945 | Submitted genomic | NC_000015.9:g.(?_2 2369360)_(22468503 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,369,360 | 22,468,503 | ||
| nssv18283988 | Submitted genomic | NC_000015.9:g.(?_2 2369360)_(22468503 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,369,360 | 22,468,503 | ||
| nssv18286594 | Submitted genomic | NC_000015.9:g.(?_2 2369360)_(22468503 _?)dup | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,369,360 | 22,468,503 | ||
| nssv18292829 | Submitted genomic | NC_000015.9:g.(?_2 2369360)_(22468503 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,369,360 | 22,468,503 | ||
| nssv18293043 | Submitted genomic | NC_000015.9:g.(?_2 2369360)_(22468503 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,369,360 | 22,468,503 | ||
| nssv18293259 | Submitted genomic | NC_000015.9:g.(?_2 2369360)_(22468503 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,369,360 | 22,468,503 | ||
| nssv18293733 | Submitted genomic | NC_000015.9:g.(?_2 2369360)_(22468503 _?)dup | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,369,360 | 22,468,503 | ||
| nssv18293757 | Submitted genomic | NC_000015.9:g.(?_2 2369360)_(22468503 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,369,360 | 22,468,503 | ||
| nssv18293821 | Submitted genomic | NC_000015.9:g.(?_2 2369360)_(22468503 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,369,360 | 22,468,503 | ||
| nssv18293904 | Submitted genomic | NC_000015.9:g.(?_2 2369360)_(22468503 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,369,360 | 22,468,503 | ||
| nssv18294213 | Submitted genomic | NC_000015.9:g.(?_2 2369360)_(22468503 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,369,360 | 22,468,503 | ||
| nssv18294495 | Submitted genomic | NC_000015.9:g.(?_2 2369360)_(22468503 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,369,360 | 22,468,503 | ||
| nssv18294548 | Submitted genomic | NC_000015.9:g.(?_2 2369360)_(22468503 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,369,360 | 22,468,503 | ||
| nssv18295795 | Submitted genomic | NC_000015.9:g.(?_2 2369360)_(22468503 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,369,360 | 22,468,503 | ||
| nssv18295868 | Submitted genomic | NC_000015.9:g.(?_2 2369360)_(22468503 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,369,360 | 22,468,503 | ||
| nssv18298621 | Submitted genomic | NC_000015.9:g.(?_2 2369360)_(22468503 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,369,360 | 22,468,503 | ||
| nssv18299401 | Submitted genomic | NC_000015.9:g.(?_2 2369360)_(22468503 _?)dup | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,369,360 | 22,468,503 | ||
| nssv18299737 | Submitted genomic | NC_000015.9:g.(?_2 2369360)_(22468503 _?)dup | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,369,360 | 22,468,503 | ||
| nssv18300718 | Submitted genomic | NC_000015.9:g.(?_2 2369360)_(22468503 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,369,360 | 22,468,503 | ||
| nssv18301728 | Submitted genomic | NC_000015.9:g.(?_2 2369360)_(22468503 _?)dup | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,369,360 | 22,468,503 | ||
| nssv18316060 | Submitted genomic | NC_000015.9:g.(?_2 2369360)_(22468503 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 22,369,360 | 22,468,503 |