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dbVar

Database of genomic structural variation

nsv6625131

Organism: Homo sapiens

Study:nstd224 (Zarrei et al. 2023)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:357,656

Publication(s):Zarrei et al. 2023

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 3984 SVs from 108 studies. See in: genome view

Remapped(Score: Perfect):42,840,534-43,198,189

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv6625131	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000019.10	Chr19	42,840,534	43,198,189
nsv6625131	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000019.9	Chr19	43,344,686	43,702,341

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv18285578	deletion	OSC2860	SNP array	Probe signal intensity	6
nssv18285596	deletion	OSC2876	SNP array	Probe signal intensity	7
nssv18286432	deletion	OSC2820	SNP array	Probe signal intensity	nssv18285516, nssv18285518, nssv18286431
nssv18295414	deletion	OSC4592	SNP array	Probe signal intensity	nssv18295955, nssv18296301
nssv18321542	deletion	OSC1209	SNP array	Probe signal intensity	10
nssv18321699	deletion	OSC1139	SNP array	Probe signal intensity	7

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv18285578	Remapped	Perfect	NC_000019.10:g.(?_ 42840534)_(4319818 9_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	42,840,534	43,198,189
nssv18285596	Remapped	Perfect	NC_000019.10:g.(?_ 42840534)_(4319818 9_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	42,840,534	43,198,189
nssv18286432	Remapped	Perfect	NC_000019.10:g.(?_ 42840534)_(4319818 9_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	42,840,534	43,198,189
nssv18295414	Remapped	Perfect	NC_000019.10:g.(?_ 42840534)_(4319818 9_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	42,840,534	43,198,189
nssv18321542	Remapped	Perfect	NC_000019.10:g.(?_ 42840534)_(4319818 9_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	42,840,534	43,198,189
nssv18321699	Remapped	Perfect	NC_000019.10:g.(?_ 42840534)_(4319818 9_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	42,840,534	43,198,189
nssv18285578	Submitted genomic		NC_000019.9:g.(?_4 3344686)_(43702341 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	43,344,686	43,702,341
nssv18285596	Submitted genomic		NC_000019.9:g.(?_4 3344686)_(43702341 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	43,344,686	43,702,341
nssv18286432	Submitted genomic		NC_000019.9:g.(?_4 3344686)_(43702341 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	43,344,686	43,702,341
nssv18295414	Submitted genomic		NC_000019.9:g.(?_4 3344686)_(43702341 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	43,344,686	43,702,341
nssv18321542	Submitted genomic		NC_000019.9:g.(?_4 3344686)_(43702341 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	43,344,686	43,702,341
nssv18321699	Submitted genomic		NC_000019.9:g.(?_4 3344686)_(43702341 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	43,344,686	43,702,341

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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