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dbVar

Database of genomic structural variation

nsv6625284

Organism: Homo sapiens

Study:nstd224 (Zarrei et al. 2023)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37

Variant Calls:7
Validation:Not tested
Clinical Assertions: No
Region Size:37,869

Publication(s):Zarrei et al. 2023

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 557 SVs from 73 studies. See in: genome view

Remapped(Score: Perfect):53,407,265-53,445,133

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv6625284	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000019.10	Chr19	53,407,265	53,445,133
nsv6625284	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000019.9	Chr19	53,910,518	53,948,386

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv18294204	deletion	OSC4394	SNP array	Probe signal intensity	nssv18294203, nssv18295099, nssv18295098
nssv18297219	deletion	OSC4829	SNP array	Probe signal intensity	12
nssv18298413	deletion	OSC5037	SNP array	Probe signal intensity	9
nssv18300568	deletion	OSC5523	SNP array	Probe signal intensity	6
nssv18301293	deletion	OSC5583	SNP array	Probe signal intensity	5
nssv18301346	deletion	OSC5597	SNP array	Probe signal intensity	8
nssv18301353	deletion	OSC5599	SNP array	Probe signal intensity	6

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv18294204	Remapped	Perfect	NC_000019.10:g.(?_ 53407265)_(5344513 3_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,407,265	53,445,133
nssv18297219	Remapped	Perfect	NC_000019.10:g.(?_ 53407265)_(5344513 3_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,407,265	53,445,133
nssv18298413	Remapped	Perfect	NC_000019.10:g.(?_ 53407265)_(5344513 3_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,407,265	53,445,133
nssv18300568	Remapped	Perfect	NC_000019.10:g.(?_ 53407265)_(5344513 3_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,407,265	53,445,133
nssv18301293	Remapped	Perfect	NC_000019.10:g.(?_ 53407265)_(5344513 3_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,407,265	53,445,133
nssv18301346	Remapped	Perfect	NC_000019.10:g.(?_ 53407265)_(5344513 3_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,407,265	53,445,133
nssv18301353	Remapped	Perfect	NC_000019.10:g.(?_ 53407265)_(5344513 3_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	53,407,265	53,445,133
nssv18294204	Submitted genomic		NC_000019.9:g.(?_5 3910518)_(53948386 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	53,910,518	53,948,386
nssv18297219	Submitted genomic		NC_000019.9:g.(?_5 3910518)_(53948386 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	53,910,518	53,948,386
nssv18298413	Submitted genomic		NC_000019.9:g.(?_5 3910518)_(53948386 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	53,910,518	53,948,386
nssv18300568	Submitted genomic		NC_000019.9:g.(?_5 3910518)_(53948386 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	53,910,518	53,948,386
nssv18301293	Submitted genomic		NC_000019.9:g.(?_5 3910518)_(53948386 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	53,910,518	53,948,386
nssv18301346	Submitted genomic		NC_000019.9:g.(?_5 3910518)_(53948386 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	53,910,518	53,948,386
nssv18301353	Submitted genomic		NC_000019.9:g.(?_5 3910518)_(53948386 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	53,910,518	53,948,386

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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