nsv6625403
- Organism: Homo sapiens
- Study:nstd224 (Zarrei et al. 2023)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37
- Variant Calls:10
- Validation:Not tested
- Clinical Assertions: No
- Region Size:25,650
- Publication(s):Zarrei et al. 2023
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 326 SVs from 56 studies. See in: genome view
Overlapping variant regions from other studies: 338 SVs from 57 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv6625403 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 152,554,336 | 152,579,985 |
| nsv6625403 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 152,526,812 | 152,552,461 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv18281693 | deletion | OSC2091 | SNP array | Probe signal intensity | nssv18281694, nssv18281695, nssv18282331 |
| nssv18282196 | deletion | OSC2229 | SNP array | Probe signal intensity | 5 |
| nssv18283319 | deletion | OSC2385 | SNP array | Probe signal intensity | 7 |
| nssv18294351 | deletion | OSC4322 | SNP array | Probe signal intensity | nssv18294683, nssv18294353, nssv18294352 |
| nssv18295079 | deletion | OSC4378 | SNP array | Probe signal intensity | 7 |
| nssv18300047 | deletion | OSC5342 | SNP array | Probe signal intensity | 6 |
| nssv18300554 | deletion | OSC5511 | SNP array | Probe signal intensity | nssv18300906, nssv18300907, nssv18300306 |
| nssv18300817 | deletion | OSC5446 | SNP array | Probe signal intensity | 9 |
| nssv18308461 | deletion | OSC0706 | SNP array | Probe signal intensity | nssv18307585, nssv18307582, nssv18308152 |
| nssv18323617 | deletion | OSC1636 | SNP array | Probe signal intensity | 6 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv18281693 | Remapped | Perfect | NC_000001.11:g.(?_ 152554336)_(152579 985_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 152,554,336 | 152,579,985 |
| nssv18282196 | Remapped | Perfect | NC_000001.11:g.(?_ 152554336)_(152579 985_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 152,554,336 | 152,579,985 |
| nssv18283319 | Remapped | Perfect | NC_000001.11:g.(?_ 152554336)_(152579 985_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 152,554,336 | 152,579,985 |
| nssv18294351 | Remapped | Perfect | NC_000001.11:g.(?_ 152554336)_(152579 985_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 152,554,336 | 152,579,985 |
| nssv18295079 | Remapped | Perfect | NC_000001.11:g.(?_ 152554336)_(152579 985_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 152,554,336 | 152,579,985 |
| nssv18300047 | Remapped | Perfect | NC_000001.11:g.(?_ 152554336)_(152579 985_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 152,554,336 | 152,579,985 |
| nssv18300554 | Remapped | Perfect | NC_000001.11:g.(?_ 152554336)_(152579 985_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 152,554,336 | 152,579,985 |
| nssv18300817 | Remapped | Perfect | NC_000001.11:g.(?_ 152554336)_(152579 985_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 152,554,336 | 152,579,985 |
| nssv18308461 | Remapped | Perfect | NC_000001.11:g.(?_ 152554336)_(152579 985_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 152,554,336 | 152,579,985 |
| nssv18323617 | Remapped | Perfect | NC_000001.11:g.(?_ 152554336)_(152579 985_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 152,554,336 | 152,579,985 |
| nssv18281693 | Submitted genomic | NC_000001.10:g.(?_ 152526812)_(152552 461_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 152,526,812 | 152,552,461 | ||
| nssv18282196 | Submitted genomic | NC_000001.10:g.(?_ 152526812)_(152552 461_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 152,526,812 | 152,552,461 | ||
| nssv18283319 | Submitted genomic | NC_000001.10:g.(?_ 152526812)_(152552 461_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 152,526,812 | 152,552,461 | ||
| nssv18294351 | Submitted genomic | NC_000001.10:g.(?_ 152526812)_(152552 461_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 152,526,812 | 152,552,461 | ||
| nssv18295079 | Submitted genomic | NC_000001.10:g.(?_ 152526812)_(152552 461_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 152,526,812 | 152,552,461 | ||
| nssv18300047 | Submitted genomic | NC_000001.10:g.(?_ 152526812)_(152552 461_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 152,526,812 | 152,552,461 | ||
| nssv18300554 | Submitted genomic | NC_000001.10:g.(?_ 152526812)_(152552 461_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 152,526,812 | 152,552,461 | ||
| nssv18300817 | Submitted genomic | NC_000001.10:g.(?_ 152526812)_(152552 461_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 152,526,812 | 152,552,461 | ||
| nssv18308461 | Submitted genomic | NC_000001.10:g.(?_ 152526812)_(152552 461_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 152,526,812 | 152,552,461 | ||
| nssv18323617 | Submitted genomic | NC_000001.10:g.(?_ 152526812)_(152552 461_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 152,526,812 | 152,552,461 |