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dbVar

Database of genomic structural variation

nsv8068

Organism: Homo sapiens

Study:nstd4 (Perry et al. 2008)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:NCBI35 (hg17)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:63,576

Publication(s):Perry et al. 2008

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 127 SVs from 16 studies. See in: genome view

Remapped(Score: Perfect):19,579,223-19,642,798

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nsv8068	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000007.14	Chr7	19,579,223	19,642,798
nsv8068	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000007.13	Chr7	19,618,846	19,682,421
nsv8068	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000007.11	Chr7	19,392,086	19,455,661

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15749	copy number loss	NA19173	Oligo aCGH	Probe signal intensity	603
nssv17277	copy number loss	NA19132	Oligo aCGH	Probe signal intensity	684
nssv17301	copy number loss	NA18860	Oligo aCGH	Probe signal intensity	768
nssv15544	copy number loss	NA10839	Oligo aCGH	Probe signal intensity	550
nssv16081	copy number loss	NA19240	Oligo aCGH	Probe signal intensity	641

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv15749	Remapped	Perfect	NC_000007.14:g.(19 579223_19579669)_( 19588512_19642798) del	GRCh38.p12	First Pass	NC_000007.14	Chr7	19,579,223	19,579,669	19,588,512	19,642,798
nssv17277	Remapped	Perfect	NC_000007.14:g.(19 579669_19580533)_( 19588512_19642798) del	GRCh38.p12	First Pass	NC_000007.14	Chr7	19,579,669	19,580,533	19,588,512	19,642,798
nssv17301	Remapped	Perfect	NC_000007.14:g.(19 579669_19580533)_( 19588512_19642798) del	GRCh38.p12	First Pass	NC_000007.14	Chr7	19,579,669	19,580,533	19,588,512	19,642,798
nssv15544	Remapped	Perfect	NC_000007.14:g.(19 580904_19585003)_( 19588512_19642798) del	GRCh38.p12	First Pass	NC_000007.14	Chr7	19,580,904	19,585,003	19,588,512	19,642,798
nssv16081	Remapped	Perfect	NC_000007.14:g.(19 580904_19585003)_( 19588512_19642798) del	GRCh38.p12	First Pass	NC_000007.14	Chr7	19,580,904	19,585,003	19,588,512	19,642,798
nssv15749	Remapped	Perfect	NC_000007.13:g.(19 618846_19619292)_( 19628135_19682421) del	GRCh37.p13	First Pass	NC_000007.13	Chr7	19,618,846	19,619,292	19,628,135	19,682,421
nssv17277	Remapped	Perfect	NC_000007.13:g.(19 619292_19620156)_( 19628135_19682421) del	GRCh37.p13	First Pass	NC_000007.13	Chr7	19,619,292	19,620,156	19,628,135	19,682,421
nssv17301	Remapped	Perfect	NC_000007.13:g.(19 619292_19620156)_( 19628135_19682421) del	GRCh37.p13	First Pass	NC_000007.13	Chr7	19,619,292	19,620,156	19,628,135	19,682,421
nssv15544	Remapped	Perfect	NC_000007.13:g.(19 620527_19624626)_( 19628135_19682421) del	GRCh37.p13	First Pass	NC_000007.13	Chr7	19,620,527	19,624,626	19,628,135	19,682,421
nssv16081	Remapped	Perfect	NC_000007.13:g.(19 620527_19624626)_( 19628135_19682421) del	GRCh37.p13	First Pass	NC_000007.13	Chr7	19,620,527	19,624,626	19,628,135	19,682,421
nssv15749	Submitted genomic		NC_000007.11:g.(19 392086_19392532)_( 19401375_19455661) del	NCBI35 (hg17)		NC_000007.11	Chr7	19,392,086	19,392,532	19,401,375	19,455,661
nssv17277	Submitted genomic		NC_000007.11:g.(19 392532_19393396)_( 19401375_19455661) del	NCBI35 (hg17)		NC_000007.11	Chr7	19,392,532	19,393,396	19,401,375	19,455,661
nssv17301	Submitted genomic		NC_000007.11:g.(19 392532_19393396)_( 19401375_19455661) del	NCBI35 (hg17)		NC_000007.11	Chr7	19,392,532	19,393,396	19,401,375	19,455,661
nssv15544	Submitted genomic		NC_000007.11:g.(19 393767_19397866)_( 19401375_19455661) del	NCBI35 (hg17)		NC_000007.11	Chr7	19,393,767	19,397,866	19,401,375	19,455,661
nssv16081	Submitted genomic		NC_000007.11:g.(19 393767_19397866)_( 19401375_19455661) del	NCBI35 (hg17)		NC_000007.11	Chr7	19,393,767	19,397,866	19,401,375	19,455,661

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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