nsv822039
- Organism: Homo sapiens
- Study:nstd67 (Park et al. 2010)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:14
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1,382
- Publication(s):Park et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 176 SVs from 53 studies. See in: genome view
Overlapping variant regions from other studies: 176 SVs from 53 studies. See in: genome view
Overlapping variant regions from other studies: 64 SVs from 19 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv822039 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 24,989,428 | 24,990,809 |
| nsv822039 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 25,030,919 | 25,032,300 |
| nsv822039 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 25,005,923 | 25,007,304 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1424872 | copy number loss | AK2 | Oligo aCGH | Probe signal intensity | 614 |
| nssv1425200 | copy number gain | NA18947 | Oligo aCGH | Probe signal intensity | 653 |
| nssv1426507 | copy number loss | NA18592 | Oligo aCGH | Probe signal intensity | 636 |
| nssv1426532 | copy number loss | AK6 | Oligo aCGH | Probe signal intensity | 714 |
| nssv1429688 | copy number loss | AK14 | Oligo aCGH | Probe signal intensity | 630 |
| nssv1431203 | copy number loss | AK18 | Oligo aCGH | Probe signal intensity | 628 |
| nssv1431940 | copy number loss | AK20 | Oligo aCGH | Probe signal intensity | 768 |
| nssv1432722 | copy number gain | NA18972 | Oligo aCGH | Probe signal intensity | 750 |
| nssv1434981 | copy number loss | NA18942 | Oligo aCGH | Probe signal intensity | 712 |
| nssv1435766 | copy number loss | NA18566 | Oligo aCGH | Probe signal intensity | 605 |
| nssv1436480 | copy number loss | NA18542 | Oligo aCGH | Probe signal intensity | 805 |
| nssv1438716 | copy number loss | NA18973 | Oligo aCGH | Probe signal intensity | 782 |
| nssv1439580 | copy number loss | NA18537 | Oligo aCGH | Probe signal intensity | 597 |
| nssv1440953 | copy number gain | NA18969 | Oligo aCGH | Probe signal intensity | 898 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv1424872 | Remapped | Perfect | NC_000003.12:g.(?_ 24989428)_(2499080 9_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 24,989,428 | 24,990,809 |
| nssv1425200 | Remapped | Perfect | NC_000003.12:g.(?_ 24989428)_(2499080 9_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 24,989,428 | 24,990,809 |
| nssv1426507 | Remapped | Perfect | NC_000003.12:g.(?_ 24989428)_(2499080 9_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 24,989,428 | 24,990,809 |
| nssv1426532 | Remapped | Perfect | NC_000003.12:g.(?_ 24989428)_(2499080 9_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 24,989,428 | 24,990,809 |
| nssv1429688 | Remapped | Perfect | NC_000003.12:g.(?_ 24989428)_(2499080 9_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 24,989,428 | 24,990,809 |
| nssv1431203 | Remapped | Perfect | NC_000003.12:g.(?_ 24989428)_(2499080 9_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 24,989,428 | 24,990,809 |
| nssv1431940 | Remapped | Perfect | NC_000003.12:g.(?_ 24989428)_(2499080 9_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 24,989,428 | 24,990,809 |
| nssv1432722 | Remapped | Perfect | NC_000003.12:g.(?_ 24989428)_(2499080 9_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 24,989,428 | 24,990,809 |
| nssv1434981 | Remapped | Perfect | NC_000003.12:g.(?_ 24989428)_(2499080 9_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 24,989,428 | 24,990,809 |
| nssv1435766 | Remapped | Perfect | NC_000003.12:g.(?_ 24989428)_(2499080 9_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 24,989,428 | 24,990,809 |
| nssv1436480 | Remapped | Perfect | NC_000003.12:g.(?_ 24989428)_(2499080 9_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 24,989,428 | 24,990,809 |
| nssv1438716 | Remapped | Perfect | NC_000003.12:g.(?_ 24989428)_(2499080 9_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 24,989,428 | 24,990,809 |
| nssv1439580 | Remapped | Perfect | NC_000003.12:g.(?_ 24989428)_(2499080 9_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 24,989,428 | 24,990,809 |
| nssv1440953 | Remapped | Perfect | NC_000003.12:g.(?_ 24989428)_(2499080 9_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 24,989,428 | 24,990,809 |
| nssv1424872 | Remapped | Perfect | NC_000003.11:g.(?_ 25030919)_(2503230 0_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 25,030,919 | 25,032,300 |
| nssv1425200 | Remapped | Perfect | NC_000003.11:g.(?_ 25030919)_(2503230 0_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 25,030,919 | 25,032,300 |
| nssv1426507 | Remapped | Perfect | NC_000003.11:g.(?_ 25030919)_(2503230 0_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 25,030,919 | 25,032,300 |
| nssv1426532 | Remapped | Perfect | NC_000003.11:g.(?_ 25030919)_(2503230 0_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 25,030,919 | 25,032,300 |
| nssv1429688 | Remapped | Perfect | NC_000003.11:g.(?_ 25030919)_(2503230 0_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 25,030,919 | 25,032,300 |
| nssv1431203 | Remapped | Perfect | NC_000003.11:g.(?_ 25030919)_(2503230 0_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 25,030,919 | 25,032,300 |
| nssv1431940 | Remapped | Perfect | NC_000003.11:g.(?_ 25030919)_(2503230 0_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 25,030,919 | 25,032,300 |
| nssv1432722 | Remapped | Perfect | NC_000003.11:g.(?_ 25030919)_(2503230 0_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 25,030,919 | 25,032,300 |
| nssv1434981 | Remapped | Perfect | NC_000003.11:g.(?_ 25030919)_(2503230 0_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 25,030,919 | 25,032,300 |
| nssv1435766 | Remapped | Perfect | NC_000003.11:g.(?_ 25030919)_(2503230 0_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 25,030,919 | 25,032,300 |
| nssv1436480 | Remapped | Perfect | NC_000003.11:g.(?_ 25030919)_(2503230 0_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 25,030,919 | 25,032,300 |
| nssv1438716 | Remapped | Perfect | NC_000003.11:g.(?_ 25030919)_(2503230 0_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 25,030,919 | 25,032,300 |
| nssv1439580 | Remapped | Perfect | NC_000003.11:g.(?_ 25030919)_(2503230 0_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 25,030,919 | 25,032,300 |
| nssv1440953 | Remapped | Perfect | NC_000003.11:g.(?_ 25030919)_(2503230 0_?)dup | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 25,030,919 | 25,032,300 |
| nssv1424872 | Submitted genomic | NC_000003.10:g.(?_ 25005923)_(2500730 4_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 25,005,923 | 25,007,304 | ||
| nssv1425200 | Submitted genomic | NC_000003.10:g.(?_ 25005923)_(2500730 4_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 25,005,923 | 25,007,304 | ||
| nssv1426507 | Submitted genomic | NC_000003.10:g.(?_ 25005923)_(2500730 4_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 25,005,923 | 25,007,304 | ||
| nssv1426532 | Submitted genomic | NC_000003.10:g.(?_ 25005923)_(2500730 4_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 25,005,923 | 25,007,304 | ||
| nssv1429688 | Submitted genomic | NC_000003.10:g.(?_ 25005923)_(2500730 4_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 25,005,923 | 25,007,304 | ||
| nssv1431203 | Submitted genomic | NC_000003.10:g.(?_ 25005923)_(2500730 4_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 25,005,923 | 25,007,304 | ||
| nssv1431940 | Submitted genomic | NC_000003.10:g.(?_ 25005923)_(2500730 4_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 25,005,923 | 25,007,304 | ||
| nssv1432722 | Submitted genomic | NC_000003.10:g.(?_ 25005923)_(2500730 4_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 25,005,923 | 25,007,304 | ||
| nssv1434981 | Submitted genomic | NC_000003.10:g.(?_ 25005923)_(2500730 4_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 25,005,923 | 25,007,304 | ||
| nssv1435766 | Submitted genomic | NC_000003.10:g.(?_ 25005923)_(2500730 4_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 25,005,923 | 25,007,304 | ||
| nssv1436480 | Submitted genomic | NC_000003.10:g.(?_ 25005923)_(2500730 4_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 25,005,923 | 25,007,304 | ||
| nssv1438716 | Submitted genomic | NC_000003.10:g.(?_ 25005923)_(2500730 4_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 25,005,923 | 25,007,304 | ||
| nssv1439580 | Submitted genomic | NC_000003.10:g.(?_ 25005923)_(2500730 4_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 25,005,923 | 25,007,304 | ||
| nssv1440953 | Submitted genomic | NC_000003.10:g.(?_ 25005923)_(2500730 4_?)dup | NCBI36 (hg18) | NC_000003.10 | Chr3 | 25,005,923 | 25,007,304 |