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dbVar

Database of genomic structural variation

nsv822588

Organism: Homo sapiens

Study:nstd67 (Park et al. 2010)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:9,916

Publication(s):Park et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1282 SVs from 80 studies. See in: genome view

Remapped(Score: Perfect):68,527,224-68,537,139

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv822588	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	68,527,224	68,537,139
nsv822588	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000004.11	Chr4	69,392,942	69,402,857
nsv822588	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000004.10	Chr4	69,075,537	69,085,452

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1427437	copy number loss	AK8	Oligo aCGH	Probe signal intensity	623
nssv1437383	copy number loss	NA18949	Oligo aCGH	Probe signal intensity	640

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1427437	Remapped	Perfect	NC_000004.12:g.(?_ 68527224)_(6853713 9_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,527,224	68,537,139
nssv1437383	Remapped	Perfect	NC_000004.12:g.(?_ 68527224)_(6853713 9_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,527,224	68,537,139
nssv1427437	Remapped	Perfect	NC_000004.11:g.(?_ 69392942)_(6940285 7_?)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	69,392,942	69,402,857
nssv1437383	Remapped	Perfect	NC_000004.11:g.(?_ 69392942)_(6940285 7_?)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	69,392,942	69,402,857
nssv1427437	Submitted genomic		NC_000004.10:g.(?_ 69075537)_(6908545 2_?)del	NCBI36 (hg18)		NC_000004.10	Chr4	69,075,537	69,085,452
nssv1437383	Submitted genomic		NC_000004.10:g.(?_ 69075537)_(6908545 2_?)del	NCBI36 (hg18)		NC_000004.10	Chr4	69,075,537	69,085,452

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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