nsv825568
- Organism: Homo sapiens
- Study:nstd67 (Park et al. 2010)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:7
- Validation:Not tested
- Clinical Assertions: No
- Region Size:4,179
- Publication(s):Park et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 340 SVs from 71 studies. See in: genome view
Overlapping variant regions from other studies: 340 SVs from 71 studies. See in: genome view
Overlapping variant regions from other studies: 187 SVs from 24 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv825568 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 112,352,734 | 112,356,912 |
| nsv825568 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 114,112,492 | 114,116,670 |
| nsv825568 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000010.9 | Chr10 | 114,102,482 | 114,106,660 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1424416 | copy number loss | NA18582 | Oligo aCGH | Probe signal intensity | 637 |
| nssv1428692 | copy number loss | NA18947 | Oligo aCGH | Probe signal intensity | 653 |
| nssv1432271 | copy number loss | AK20 | Oligo aCGH | Probe signal intensity | 768 |
| nssv1433854 | copy number loss | NA18526 | Oligo aCGH | Probe signal intensity | 677 |
| nssv1436047 | copy number gain | NA18566 | Oligo aCGH | Probe signal intensity | 605 |
| nssv1437635 | copy number loss | NA18949 | Oligo aCGH | Probe signal intensity | 640 |
| nssv1438324 | copy number loss | NA18951 | Oligo aCGH | Probe signal intensity | 589 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv1424416 | Remapped | Perfect | NC_000010.11:g.(?_ 112352734)_(112356 912_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 112,352,734 | 112,356,912 |
| nssv1428692 | Remapped | Perfect | NC_000010.11:g.(?_ 112352734)_(112356 912_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 112,352,734 | 112,356,912 |
| nssv1432271 | Remapped | Perfect | NC_000010.11:g.(?_ 112352734)_(112356 912_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 112,352,734 | 112,356,912 |
| nssv1433854 | Remapped | Perfect | NC_000010.11:g.(?_ 112352734)_(112356 912_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 112,352,734 | 112,356,912 |
| nssv1436047 | Remapped | Perfect | NC_000010.11:g.(?_ 112352734)_(112356 912_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 112,352,734 | 112,356,912 |
| nssv1437635 | Remapped | Perfect | NC_000010.11:g.(?_ 112352734)_(112356 912_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 112,352,734 | 112,356,912 |
| nssv1438324 | Remapped | Perfect | NC_000010.11:g.(?_ 112352734)_(112356 912_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 112,352,734 | 112,356,912 |
| nssv1424416 | Remapped | Perfect | NC_000010.10:g.(?_ 114112492)_(114116 670_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 114,112,492 | 114,116,670 |
| nssv1428692 | Remapped | Perfect | NC_000010.10:g.(?_ 114112492)_(114116 670_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 114,112,492 | 114,116,670 |
| nssv1432271 | Remapped | Perfect | NC_000010.10:g.(?_ 114112492)_(114116 670_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 114,112,492 | 114,116,670 |
| nssv1433854 | Remapped | Perfect | NC_000010.10:g.(?_ 114112492)_(114116 670_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 114,112,492 | 114,116,670 |
| nssv1436047 | Remapped | Perfect | NC_000010.10:g.(?_ 114112492)_(114116 670_?)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 114,112,492 | 114,116,670 |
| nssv1437635 | Remapped | Perfect | NC_000010.10:g.(?_ 114112492)_(114116 670_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 114,112,492 | 114,116,670 |
| nssv1438324 | Remapped | Perfect | NC_000010.10:g.(?_ 114112492)_(114116 670_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 114,112,492 | 114,116,670 |
| nssv1424416 | Submitted genomic | NC_000010.9:g.(?_1 14102482)_(1141066 60_?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 114,102,482 | 114,106,660 | ||
| nssv1428692 | Submitted genomic | NC_000010.9:g.(?_1 14102482)_(1141066 60_?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 114,102,482 | 114,106,660 | ||
| nssv1432271 | Submitted genomic | NC_000010.9:g.(?_1 14102482)_(1141066 60_?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 114,102,482 | 114,106,660 | ||
| nssv1433854 | Submitted genomic | NC_000010.9:g.(?_1 14102482)_(1141066 60_?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 114,102,482 | 114,106,660 | ||
| nssv1436047 | Submitted genomic | NC_000010.9:g.(?_1 14102482)_(1141066 60_?)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 114,102,482 | 114,106,660 | ||
| nssv1437635 | Submitted genomic | NC_000010.9:g.(?_1 14102482)_(1141066 60_?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 114,102,482 | 114,106,660 | ||
| nssv1438324 | Submitted genomic | NC_000010.9:g.(?_1 14102482)_(1141066 60_?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 114,102,482 | 114,106,660 |