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dbVar

Database of genomic structural variation

nsv825686

Organism: Homo sapiens

Study:nstd67 (Park et al. 2010)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:218,519

Publication(s):Park et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1315 SVs from 85 studies. See in: genome view

Remapped(Score: Perfect):189,356,676-189,575,194

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv825686	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	189,356,676	189,575,194
nsv825686	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000001.10	Chr1	189,325,806	189,544,324
nsv825686	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000001.9	Chr1	187,592,429	187,810,947

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1422402	copy number loss	NA18552	Oligo aCGH	Probe signal intensity	610
nssv1436373	copy number loss	NA18542	Oligo aCGH	Probe signal intensity	805

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1422402	Remapped	Perfect	NC_000001.11:g.(?_ 189356676)_(189575 194_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	189,356,676	189,575,194
nssv1436373	Remapped	Perfect	NC_000001.11:g.(?_ 189356676)_(189575 194_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	189,356,676	189,575,194
nssv1422402	Remapped	Perfect	NC_000001.10:g.(?_ 189325806)_(189544 324_?)del	GRCh37.p13	First Pass	NC_000001.10	Chr1	189,325,806	189,544,324
nssv1436373	Remapped	Perfect	NC_000001.10:g.(?_ 189325806)_(189544 324_?)del	GRCh37.p13	First Pass	NC_000001.10	Chr1	189,325,806	189,544,324
nssv1422402	Submitted genomic		NC_000001.9:g.(?_1 87592429)_(1878109 47_?)del	NCBI36 (hg18)		NC_000001.9	Chr1	187,592,429	187,810,947
nssv1436373	Submitted genomic		NC_000001.9:g.(?_1 87592429)_(1878109 47_?)del	NCBI36 (hg18)		NC_000001.9	Chr1	187,592,429	187,810,947

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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