nsv826771
- Organism: Homo sapiens
- Study:nstd67 (Park et al. 2010)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:8
- Validation:Not tested
- Clinical Assertions: No
- Region Size:2,184
- Publication(s):Park et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 428 SVs from 60 studies. See in: genome view
Overlapping variant regions from other studies: 428 SVs from 60 studies. See in: genome view
Overlapping variant regions from other studies: 254 SVs from 23 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv826771 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000013.11 | Chr13 | 101,241,859 | 101,244,042 |
| nsv826771 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000013.10 | Chr13 | 101,894,210 | 101,896,393 |
| nsv826771 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000013.9 | Chr13 | 100,692,211 | 100,694,394 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1426092 | copy number loss | AK4 | Oligo aCGH | Probe signal intensity | 712 |
| nssv1429319 | copy number loss | NA18968 | Oligo aCGH | Probe signal intensity | 670 |
| nssv1430120 | copy number gain | AK14 | Oligo aCGH | Probe signal intensity | 630 |
| nssv1432384 | copy number loss | AK20 | Oligo aCGH | Probe signal intensity | 768 |
| nssv1435382 | copy number gain | NA18942 | Oligo aCGH | Probe signal intensity | 712 |
| nssv1435696 | copy number loss | NA18592 | Oligo aCGH | Probe signal intensity | 636 |
| nssv1437726 | copy number loss | NA18949 | Oligo aCGH | Probe signal intensity | 640 |
| nssv1441465 | copy number loss | NA18969 | Oligo aCGH | Probe signal intensity | 898 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv1426092 | Remapped | Perfect | NC_000013.11:g.(?_ 101241859)_(101244 042_?)del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 101,241,859 | 101,244,042 |
| nssv1429319 | Remapped | Perfect | NC_000013.11:g.(?_ 101241859)_(101244 042_?)del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 101,241,859 | 101,244,042 |
| nssv1430120 | Remapped | Perfect | NC_000013.11:g.(?_ 101241859)_(101244 042_?)dup | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 101,241,859 | 101,244,042 |
| nssv1432384 | Remapped | Perfect | NC_000013.11:g.(?_ 101241859)_(101244 042_?)del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 101,241,859 | 101,244,042 |
| nssv1435382 | Remapped | Perfect | NC_000013.11:g.(?_ 101241859)_(101244 042_?)dup | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 101,241,859 | 101,244,042 |
| nssv1435696 | Remapped | Perfect | NC_000013.11:g.(?_ 101241859)_(101244 042_?)del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 101,241,859 | 101,244,042 |
| nssv1437726 | Remapped | Perfect | NC_000013.11:g.(?_ 101241859)_(101244 042_?)del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 101,241,859 | 101,244,042 |
| nssv1441465 | Remapped | Perfect | NC_000013.11:g.(?_ 101241859)_(101244 042_?)del | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 101,241,859 | 101,244,042 |
| nssv1426092 | Remapped | Perfect | NC_000013.10:g.(?_ 101894210)_(101896 393_?)del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 101,894,210 | 101,896,393 |
| nssv1429319 | Remapped | Perfect | NC_000013.10:g.(?_ 101894210)_(101896 393_?)del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 101,894,210 | 101,896,393 |
| nssv1430120 | Remapped | Perfect | NC_000013.10:g.(?_ 101894210)_(101896 393_?)dup | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 101,894,210 | 101,896,393 |
| nssv1432384 | Remapped | Perfect | NC_000013.10:g.(?_ 101894210)_(101896 393_?)del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 101,894,210 | 101,896,393 |
| nssv1435382 | Remapped | Perfect | NC_000013.10:g.(?_ 101894210)_(101896 393_?)dup | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 101,894,210 | 101,896,393 |
| nssv1435696 | Remapped | Perfect | NC_000013.10:g.(?_ 101894210)_(101896 393_?)del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 101,894,210 | 101,896,393 |
| nssv1437726 | Remapped | Perfect | NC_000013.10:g.(?_ 101894210)_(101896 393_?)del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 101,894,210 | 101,896,393 |
| nssv1441465 | Remapped | Perfect | NC_000013.10:g.(?_ 101894210)_(101896 393_?)del | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 101,894,210 | 101,896,393 |
| nssv1426092 | Submitted genomic | NC_000013.9:g.(?_1 00692211)_(1006943 94_?)del | NCBI36 (hg18) | NC_000013.9 | Chr13 | 100,692,211 | 100,694,394 | ||
| nssv1429319 | Submitted genomic | NC_000013.9:g.(?_1 00692211)_(1006943 94_?)del | NCBI36 (hg18) | NC_000013.9 | Chr13 | 100,692,211 | 100,694,394 | ||
| nssv1430120 | Submitted genomic | NC_000013.9:g.(?_1 00692211)_(1006943 94_?)dup | NCBI36 (hg18) | NC_000013.9 | Chr13 | 100,692,211 | 100,694,394 | ||
| nssv1432384 | Submitted genomic | NC_000013.9:g.(?_1 00692211)_(1006943 94_?)del | NCBI36 (hg18) | NC_000013.9 | Chr13 | 100,692,211 | 100,694,394 | ||
| nssv1435382 | Submitted genomic | NC_000013.9:g.(?_1 00692211)_(1006943 94_?)dup | NCBI36 (hg18) | NC_000013.9 | Chr13 | 100,692,211 | 100,694,394 | ||
| nssv1435696 | Submitted genomic | NC_000013.9:g.(?_1 00692211)_(1006943 94_?)del | NCBI36 (hg18) | NC_000013.9 | Chr13 | 100,692,211 | 100,694,394 | ||
| nssv1437726 | Submitted genomic | NC_000013.9:g.(?_1 00692211)_(1006943 94_?)del | NCBI36 (hg18) | NC_000013.9 | Chr13 | 100,692,211 | 100,694,394 | ||
| nssv1441465 | Submitted genomic | NC_000013.9:g.(?_1 00692211)_(1006943 94_?)del | NCBI36 (hg18) | NC_000013.9 | Chr13 | 100,692,211 | 100,694,394 |