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dbVar

Database of genomic structural variation

nsv826928

Organism: Homo sapiens

Study:nstd67 (Park et al. 2010)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:NCBI36 (hg18)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:59,751

Publication(s):Park et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 673 SVs from 75 studies. See in: genome view

Remapped(Score: Perfect):41,140,758-41,200,508

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv826928	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000014.9	Chr14	41,140,758	41,200,508
nsv826928	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000014.8	Chr14	41,609,961	41,669,711
nsv826928	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000014.7	Chr14	40,679,711	40,739,461

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1427035	copy number loss	AK6	Oligo aCGH	Probe signal intensity	714
nssv1431618	copy number loss	AK18	Oligo aCGH	Probe signal intensity	628
nssv1435829	copy number loss	NA18592	Oligo aCGH	Probe signal intensity	636
nssv1437746	copy number loss	NA18949	Oligo aCGH	Probe signal intensity	640
nssv1438432	copy number loss	NA18951	Oligo aCGH	Probe signal intensity	589
nssv1440639	copy number loss	NA18564	Oligo aCGH	Probe signal intensity	612

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1427035	Remapped	Perfect	NC_000014.9:g.(?_4 1140758)_(41200508 _?)del	GRCh38.p12	First Pass	NC_000014.9	Chr14	41,140,758	41,200,508
nssv1431618	Remapped	Perfect	NC_000014.9:g.(?_4 1140758)_(41200508 _?)del	GRCh38.p12	First Pass	NC_000014.9	Chr14	41,140,758	41,200,508
nssv1435829	Remapped	Perfect	NC_000014.9:g.(?_4 1140758)_(41200508 _?)del	GRCh38.p12	First Pass	NC_000014.9	Chr14	41,140,758	41,200,508
nssv1437746	Remapped	Perfect	NC_000014.9:g.(?_4 1140758)_(41200508 _?)del	GRCh38.p12	First Pass	NC_000014.9	Chr14	41,140,758	41,200,508
nssv1438432	Remapped	Perfect	NC_000014.9:g.(?_4 1140758)_(41200508 _?)del	GRCh38.p12	First Pass	NC_000014.9	Chr14	41,140,758	41,200,508
nssv1440639	Remapped	Perfect	NC_000014.9:g.(?_4 1140758)_(41200508 _?)del	GRCh38.p12	First Pass	NC_000014.9	Chr14	41,140,758	41,200,508
nssv1427035	Remapped	Perfect	NC_000014.8:g.(?_4 1609961)_(41669711 _?)del	GRCh37.p13	First Pass	NC_000014.8	Chr14	41,609,961	41,669,711
nssv1431618	Remapped	Perfect	NC_000014.8:g.(?_4 1609961)_(41669711 _?)del	GRCh37.p13	First Pass	NC_000014.8	Chr14	41,609,961	41,669,711
nssv1435829	Remapped	Perfect	NC_000014.8:g.(?_4 1609961)_(41669711 _?)del	GRCh37.p13	First Pass	NC_000014.8	Chr14	41,609,961	41,669,711
nssv1437746	Remapped	Perfect	NC_000014.8:g.(?_4 1609961)_(41669711 _?)del	GRCh37.p13	First Pass	NC_000014.8	Chr14	41,609,961	41,669,711
nssv1438432	Remapped	Perfect	NC_000014.8:g.(?_4 1609961)_(41669711 _?)del	GRCh37.p13	First Pass	NC_000014.8	Chr14	41,609,961	41,669,711
nssv1440639	Remapped	Perfect	NC_000014.8:g.(?_4 1609961)_(41669711 _?)del	GRCh37.p13	First Pass	NC_000014.8	Chr14	41,609,961	41,669,711
nssv1427035	Submitted genomic		NC_000014.7:g.(?_4 0679711)_(40739461 _?)del	NCBI36 (hg18)		NC_000014.7	Chr14	40,679,711	40,739,461
nssv1431618	Submitted genomic		NC_000014.7:g.(?_4 0679711)_(40739461 _?)del	NCBI36 (hg18)		NC_000014.7	Chr14	40,679,711	40,739,461
nssv1435829	Submitted genomic		NC_000014.7:g.(?_4 0679711)_(40739461 _?)del	NCBI36 (hg18)		NC_000014.7	Chr14	40,679,711	40,739,461
nssv1437746	Submitted genomic		NC_000014.7:g.(?_4 0679711)_(40739461 _?)del	NCBI36 (hg18)		NC_000014.7	Chr14	40,679,711	40,739,461
nssv1438432	Submitted genomic		NC_000014.7:g.(?_4 0679711)_(40739461 _?)del	NCBI36 (hg18)		NC_000014.7	Chr14	40,679,711	40,739,461
nssv1440639	Submitted genomic		NC_000014.7:g.(?_4 0679711)_(40739461 _?)del	NCBI36 (hg18)		NC_000014.7	Chr14	40,679,711	40,739,461

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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